Hello! 2009/8/13 Junjun Zhang <[email protected]>: > Thanks Richard. Yes, please try this first. If leaving includeDatasets empty > in the registry doesn't help, please send me the xml files. The includeDatasets is empty, but perhaps the following output from 'perl bin/configure.pl ...' makes more sense to you:
... [NEW CONFIGURATION] .... WITH MEMORY [default] default ... My Mart 55 (unstable) ... 001/004 ... btaurus_my_ensembl ................ (RDBMS) 127.0.0.1:1187 ................ OK default ... My Mart 55 (unstable) ... 002/004 ... mmusculus_my_ensembl .............. (RDBMS) 127.0.0.1:1187 ................ OK default ... My Mart 55 (unstable) ... 003/004 ... celegans_my_ensembl ............... (RDBMS) 127.0.0.1:1187 ................ OK default ... My Mart 55 (unstable) ... 004/004 ... hsapiens_my_ensembl ............... (RDBMS) 127.0.0.1:1187 ................ OK default ... Vega Mart 54 (stable) .... 001/002 ... hsapiens_gene_vega ........................ (RDBMS) 127.0.0.1:1188 ................ OK default ... Vega Mart 54 (stable) .... 002/002 ... mmusculus_gene_vega ....................... (RDBMS) 127.0.0.1:1188 ................ OK ... Compiling templates for visible datasets [1/3] Attribute Panel of Dataset.. :hsapiens_my_ensembl [1/3] Filter Panel of Dataset..... :hsapiens_my_ensembl [2/3] Attribute Panel of Dataset.. :hsapiens_gene_vega [2/3] Filter Panel of Dataset..... :hsapiens_gene_vega [3/3] Attribute Panel of Dataset.. :mmusculus_gene_vega [3/3] Filter Panel of Dataset..... :mmusculus_gene_vega I am puzzled that the script detects the datasets of the various species above, but then compiles the templates only for humans. Perhaps this is how it should be, but I am not sure. Thanks, Joachim -- B.1079 Michael Smith Building Faculty of Life Sciences The University of Manchester Oxford Road Manchester M13 9PT United Kingdom
