Paul Mineiro wrote:
>
> right. i probably should've mentioned earlier that "CGAT" x 50000 is
> really fast in both mod_perl and command line.
>
> if anybody wants my actual $seq data, please let me know.
i neglected to mention something big: the production version is
identical but using perl 5.005 and it
doesn't have this problem.
perl -V of the production perl follows.
thanks,
-- p
Summary of my perl5 (5.0 patchlevel 5 subversion 3) configuration:
Platform:
osname=linux, osvers=2.4.4-xfs, archname=i686-linux
uname='linux rock.codegrok.lab 2.4.4-xfs #8 smp wed may 30 17:37:44
pdt 2001 i686 unknown '
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef useperlio=undef d_sfio=undef
Compiler:
cc='cc', optimize='-O2', gccversion=2.95.4 20010319 (Debian prerelease)
cppflags='-Dbool=char -DHAS_BOOL -I/usr/local/include'
ccflags ='-Dbool=char -DHAS_BOOL -I/usr/local/include'
stdchar='char', d_stdstdio=undef, usevfork=false
intsize=4, longsize=4, ptrsize=4, doublesize=8
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
alignbytes=4, usemymalloc=n, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib
libs=-lnsl -lgdbm -ldbm -ldb -ldl -lm -lc -lcrypt
libc=, so=so, useshrplib=false, libperl=libperl.a
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-rdynamic'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
Characteristics of this binary (from libperl):
Built under linux
Compiled at Oct 30 2001 10:33:04
%ENV:
PERL5LIB="/home/codegrok/genegrokker-interface/lib/perl5:/home/codegrok/genegrokker-interface/ext/lib/perl5"
@INC:
/home/codegrok/genegrokker-interface/lib/perl5
/home/codegrok/genegrokker-interface/ext/lib/perl5
/home/codegrok/genegrokker-interface/ext/lib/perl5/5.00503/i686-linux
/home/codegrok/genegrokker-interface/ext/lib/perl5/5.00503
/home/codegrok/genegrokker-interface/ext/lib/perl5/site_perl/5.005/i686-linux
/home/codegrok/genegrokker-interface/ext/lib/perl5/site_perl/5.005
.
