----- Forwarded message from Hugo Benitez De La Fuente
<[email protected]> -----
Date: Thu, 16 Jan 2014 19:27:33 -0500
From: Hugo Benitez De La Fuente <[email protected]>
Reply-To: Hugo Benitez De La Fuente
<[email protected]>
Subject: RE: Morphoj map onto phylogeny
To: "[email protected]" <[email protected]>
Dear Mike
The names of the species in your nexus tree must be the same name of the
classifier species in MorphoJ, check if you have the same names on species and
in your data and tree...
a Nexus file for 9 species look like: (if you open the nexus file in notepad)
#NEXUS
BEGIN TREES;
Title Trees;
LINK Taxa = Taxa;
TRANSLATE
1 specie1,
2 specie2,
3 specie3,
4 specie4,
5 specie5,
6 specie6,
7 specie7,
8 specie8,
9 specie8;
TREE Consensus = ((((1,2),3),4),(((5,6),7),(8,9)));
END;
Fix the names and try gain! I hope that helps!
Best wishes
Hugo
--
Hugo A. Benítez
Biologist
MSc in Zoology
PhD (c) Evolutionary Biology
University of Manchester
http://www.morphoshape.com
________________________________________
De: [email protected] <[email protected]>
Enviado: jueves, 16 de enero de 2014 21:17
Para: [email protected]
Asunto: Morphoj map onto phylogeny
----- Forwarded message from "Gemmell, Michael" <[email protected]> -----
Date: Wed, 15 Jan 2014 19:57:30 -0500
From: "Gemmell, Michael" <[email protected]>
Reply-To: "Gemmell, Michael" <[email protected]>
Subject: Morphoj map onto phylogeny
To: "[email protected]" <[email protected]>
Hi
I am having trouble with the map onto phylogeny function in morphoj. I am
getting an error message saying "The following names are in the data set but
not in the phylogeny: o c l v"
These are species classifiers extracted from the names of the samples.
I have ≈40 samples from 4 species. I guess there needs to be something in the
nexus file which is missing. Has anyone mapped onto phylogeny successfully? if
so would it be possible to have a look at the .nex file to see where mine
differs, or if anyone had instructions to help me edit the file so morphoj can
read it correctly. I made my phylogeny file using SplitsTree if that info is of
any use.
Regards
Mike Gemmell
----- End forwarded message -----
----- End forwarded message -----
