----- Forwarded message from Shobnom Ferdous <[email protected]>
-----
Date: Thu, 16 Jan 2014 21:32:21 -0500
From: Shobnom Ferdous <[email protected]>
Reply-To: Shobnom Ferdous <[email protected]>
Subject: RE: Morphoj map onto phylogeny
To: "[email protected]" <[email protected]>
Hello
The individuals name in morphoj file and nexus file has to be same, so if your
nexus file has different name then edit it or it wont run. This is a common
problem when the taxa name or id are different in two datasets and if there is
any taxa which are not in common, you could prune that.
I hope it helps.
Shobnom Ferdous, Ph. D.
331 Funchess Hall
Department of Biological Sciences
Auburn University, AL 36849
________________________________________
From: [email protected]
<[email protected]>
Sent: Thursday, January 16, 2014 6:17 PM
To: [email protected]
Subject: Morphoj map onto phylogeny
----- Forwarded message from "Gemmell, Michael" <[email protected]> -----
Date: Wed, 15 Jan 2014 19:57:30 -0500
From: "Gemmell, Michael" <[email protected]>
Reply-To: "Gemmell, Michael" <[email protected]>
Subject: Morphoj map onto phylogeny
To: "[email protected]" <[email protected]>
Hi
I am having trouble with the map onto phylogeny function in morphoj. I am
getting an error message saying "The following names are in the data set but
not in the phylogeny: o c l v"
These are species classifiers extracted from the names of the samples.
I have ≈40 samples from 4 species. I guess there needs to be something in the
nexus file which is missing. Has anyone mapped onto phylogeny successfully? if
so would it be possible to have a look at the .nex file to see where mine
differs, or if anyone had instructions to help me edit the file so morphoj can
read it correctly. I made my phylogeny file using SplitsTree if that info is of
any use.
Regards
Mike Gemmell
----- End forwarded message -----
----- End forwarded message -----
