----- Forwarded message from "Gemmell, Michael" <[email protected]> -----
Date: Sun, 9 Feb 2014 18:13:48 -0500
From: "Gemmell, Michael" <[email protected]>
Reply-To: "Gemmell, Michael" <[email protected]>
Subject: Re: Morphoj map onto phylogeny
To: "<[email protected]>" <[email protected]>
Hi
Thanks to everyone who gave me some advice. I seem to have got it working. I
was trying to use short classifiers rather than the whole sample names when
trying to map the data onto phylogeny.
Regards
Mike
On 17/01/2014, at 1:17 PM, [email protected] wrote:
>
> ----- Forwarded message from "Gemmell, Michael" <[email protected]>
> -----
>
> Date: Wed, 15 Jan 2014 19:57:30 -0500
> From: "Gemmell, Michael" <[email protected]>
> Reply-To: "Gemmell, Michael" <[email protected]>
> Subject: Morphoj map onto phylogeny
> To: "[email protected]" <[email protected]>
>
> Hi
>
> I am having trouble with the map onto phylogeny function in morphoj. I am
> getting an error message saying "The following names are in the data set but
> not in the phylogeny: o c l v"
> These are species classifiers extracted from the names of the samples.
> I have ≈40 samples from 4 species. I guess there needs to be something in the
> nexus file which is missing. Has anyone mapped onto phylogeny successfully?
> if so would it be possible to have a look at the .nex file to see where mine
> differs, or if anyone had instructions to help me edit the file so morphoj
> can read it correctly. I made my phylogeny file using SplitsTree if that info
> is of any use.
>
> Regards
>
> Mike Gemmell
>
> ----- End forwarded message -----
>
>
----- End forwarded message -----
