----- Forwarded message from [email protected] ----- Date: Fri, 31 Jan 2014 20:36:05 -0800 From: [email protected] Reply-To: [email protected] Subject: RE: Morphoj map onto phylogeny To: [email protected]
----- Forwarded message from [email protected] ----- Date: Fri, 24 Jan 2014 03:15:52 -0500 From: [email protected] Reply-To: [email protected] Subject: RE: Morphoj map onto phylogeny To: [email protected] Dear Mike Gemmell Your error message literally means what it says: some species names are missing in the nexus file. Is it possible that you used different names in the MorphoJ data set than in your nexus file? The names have to match exactly, so pay attention to caps and typos. And all names have to be present in both files, i.e., if there are several species in your data set that you would not like to use in your phylogenetic analysis, you have to take them out before hand. It's been a long time since I last used this option in MorphoJ, so I haven't got an example nexus file readily available. I hope this helps though. Best wishes, Anneke van Heteren ________________________________________ From: [email protected] [[email protected]] Sent: 17 January 2014 00:17 To: [email protected] Subject: Morphoj map onto phylogeny ----- Forwarded message from "Gemmell, Michael" <[email protected]> ----- Date: Wed, 15 Jan 2014 19:57:30 -0500 From: "Gemmell, Michael" <[email protected]> Reply-To: "Gemmell, Michael" <[email protected]> Subject: Morphoj map onto phylogeny To: "[email protected]" <[email protected]> Hi I am having trouble with the map onto phylogeny function in morphoj. I am getting an error message saying "The following names are in the data set but not in the phylogeny: o c l v" These are species classifiers extracted from the names of the samples. I have ≈40 samples from 4 species. I guess there needs to be something in the nexus file which is missing. Has anyone mapped onto phylogeny successfully? if so would it be possible to have a look at the .nex file to see where mine differs, or if anyone had instructions to help me edit the file so morphoj can read it correctly. I made my phylogeny file using SplitsTree if that info is of any use. Regards Mike Gemmell ----- End forwarded message ----- Consider the environment. Please don't print this e-mail unless you really need to. This email and any attachments are confidential and intended solely for the addressee and may also be privileged or exempt from disclosure under applicable law. If you are not the addressee, or have received this e-mail in error, please notify the sender immediately, delete it from your system and do not copy, disclose or otherwise act upon any part of this email or its attachments. Internet communications are not guaranteed to be secure or virus-free. University of Roehampton does not accept responsibility for any loss arising from unauthorised access to, or interference with, any Internet communications by any third party, or from the transmission of any viruses. Any opinion or other information in this e-mail or its attachments that does not relate to the business of University of Roehampton is personal to the sender and is not given or endorsed by University of Roehampton. University of Roehampton is the trading name of Roehampton University, a company limited by guarantee incorporated in England under number 5161359. Registered Office: Grove House, Roehampton Lane, London SW15 5PJ. An exempt charity. ----- End forwarded message ----- ----- End forwarded message -----
