> 2) filelist:
>
<snip>
> get a kind of temporary script which would be run on each file in the list
> when you opened it. A kind of frozen view (or a curried one?).
>
> Maybe I should just make it. Then I wouldn't have to explain the idea.
Ok, I was confused on what you meant before. I've been in similar
situations, if you are going to try something like this you might want to
take a look at the script I use (attached on the off chance you don't have
something similar). It'll probably need some customization, seeing as I
use it for checking search results quickly (and don't deal w\ any gui
stuff).
> 4) sec struc elem:
I'm two for two on misunderstanding you today apparently...Thanks for
clearing it up.
Pete
Pete Meyer
Fu Lab
BMCB grad student
Cornell University
from pymol import cmd
class ModelHolder:
#loop over pdb files named base_##.pdb (from ##=0 to 99)
#to use: run ModelHolder.py ; m=ModelHolder('base')
def __init__(self,base):
self.base=base
self.pos=0
self.show()
def makefname(self):
fname=self.name()+'.pdb'
return fname
def name(self):
name=self.base+'_'+str(self.pos)
return name
def clear(self):
name=self.name()
cmd.delete(name)
def show(self):
n=self.name()
cmd.load(self.makefname(),n)
cmd.hide('everything',n)
cmd.show('ribbon',n)
#color red for even or cyan for odd pos
if self.pos%2==0: cmd.color('red',n)
else: cmd.color('cyan',n)
def next(self):
self.clear()
self.pos=self.pos+1
if self.pos>99:
self.pos=0
cmd.bg_color('grey80')
self.show()
def last(self):
self.clear()
self.pos=self.pos-1
if self.pos<0:
self.pos=99
cmd.bg_color('grey80')
self.show()
def go(self,n):
pos=self.pos
self.clear()
if (n>=0) and ( n<=99):
self.pos=n
self.show()
else:
self.show()
