1) Header file display.
2) Filelist : show a directory as a list, to avoid repeated "load" commands.

this is a good idea, and a fairly easy one to implement. do you mean present all of the pdb files (or the like) from a chosen directory in a list, and load each molecule via a double-click?

3) Ramachandran plots : I keep meaning to try dynoplot on the hybrid
pymol, but never do.
4) Secondary structure display.

Oh the list is endless!

keep 'em comin'.

But number one suggestion (suggestion 0, in fact) is :
0) Tutorial on writing aqua plugins.

i'll work on a tutorial and post it on my website.

if you have experience coding in Xcode, plug-in development is fairly straightforward. In a nutshell, you use the pymol api to send pymol commands. The only funky part i've seen so far involves bridging Python and Objective C data structures (e.g. when asking pymol for a response of some kind), but even this isn't that bad.

-stephen


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