> You would have to work with the DynoPlot author to improve this.
So, I figured it would be nicer if I sent the author a patch instead of just
complaining, so I went to look at the code.
Right now, it uses integer math to try to find the residues before and after,
but I know from my mistakes that is generally a bad idea as it ignores
insertion codes (eg 82A, 82B in chain H of 1bgx).
I think I can get a list of residues in a chain in order by doing iterate.
For example:
>iterate 1bgx and chain h and name CA, print resi
seems to give me the residues in the correct sequence. With the correct
syntax, this would give me a list in python.
Is this guaranteed to be the correct order? Should we have a get_residues
method in addition to get_chains that is guaranteed to produce residues in the
correct sequence?
-David
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