When I load an xyz file with several frames (for example the result of an MD
simulation) I find that pymol calculates and sets the bonds only using the
initial frame. For frames > 1 the bonds are not recalculated. The only "work
around" I found is to load(..., multiplex=1) which loads the frames into
separate objects. But now I can not play the MD trajectory as a movie.
I would like to suggest that this feature be added to pymol so that MD
trajectories can be played with proper bonding for all frames.
Thanks
nick
------------------------------------------------------------------------------
Download Intel® Parallel Studio Eval
Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
http://p.sf.net/sfu/intel-sw-dev
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
