Could the connect_mode setting be better documented? The current
documentation doesn't say much about what that setting does.
nick
On Fri, Mar 12, 2010 at 12:08, Jason Vertrees <
jason.vertr...@schrodinger.com> wrote:
> Nicolas,
>
> Try:
>
> set connect_mode, 2
> load yourXYZ.xyz, discrete=1
>
> -- Jason
>
> On Fri, Mar 12, 2010 at 1:50 PM, Nicolas Bock <nicolasb...@gmail.com>
> wrote:
> > Please find attached an example xyz file.
> >
> > nick
> >
> >
> > On Fri, Mar 12, 2010 at 11:20, Nicolas Bock <nicolasb...@gmail.com>
> wrote:
> >>
> >> When I load an xyz file with several frames (for example the result of
> an
> >> MD simulation) I find that pymol calculates and sets the bonds only
> using
> >> the initial frame. For frames > 1 the bonds are not recalculated. The
> only
> >> "work around" I found is to load(..., multiplex=1) which loads the
> frames
> >> into separate objects. But now I can not play the MD trajectory as a
> movie.
> >>
> >> I would like to suggest that this feature be added to pymol so that MD
> >> trajectories can be played with proper bonding for all frames.
> >>
> >> Thanks
> >>
> >> nick
> >>
> >
> >
> >
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>
>
>
> --
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrodinger, LLC
>
> (e) jason.vertr...@schrodinger.com
> (o) +1 (603) 374-7120
>
------------------------------------------------------------------------------
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http://p.sf.net/sfu/intel-sw-dev
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