I should mention that the first 3 columns are the cartesian coordinates in
Angstroms, and the last 3 columes the forces in eV/A.
On Fri, Mar 12, 2010 at 11:50, Nicolas Bock <nicolasb...@gmail.com> wrote:
> Please find attached an example xyz file.
>
> nick
>
>
>
> On Fri, Mar 12, 2010 at 11:20, Nicolas Bock <nicolasb...@gmail.com> wrote:
>
>> When I load an xyz file with several frames (for example the result of an
>> MD simulation) I find that pymol calculates and sets the bonds only using
>> the initial frame. For frames > 1 the bonds are not recalculated. The only
>> "work around" I found is to load(..., multiplex=1) which loads the frames
>> into separate objects. But now I can not play the MD trajectory as a movie.
>>
>> I would like to suggest that this feature be added to pymol so that MD
>> trajectories can be played with proper bonding for all frames.
>>
>> Thanks
>>
>> nick
>>
>>
>
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