Nicolas, Try:
set connect_mode, 2 load yourXYZ.xyz, discrete=1 -- Jason On Fri, Mar 12, 2010 at 1:50 PM, Nicolas Bock <nicolasb...@gmail.com> wrote: > Please find attached an example xyz file. > > nick > > > On Fri, Mar 12, 2010 at 11:20, Nicolas Bock <nicolasb...@gmail.com> wrote: >> >> When I load an xyz file with several frames (for example the result of an >> MD simulation) I find that pymol calculates and sets the bonds only using >> the initial frame. For frames > 1 the bonds are not recalculated. The only >> "work around" I found is to load(..., multiplex=1) which loads the frames >> into separate objects. But now I can not play the MD trajectory as a movie. >> >> I would like to suggest that this feature be added to pymol so that MD >> trajectories can be played with proper bonding for all frames. >> >> Thanks >> >> nick >> > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
