Hi Christos,
Thanks for your help.
I tried what you said but I got an error with boost.
I think the problem came from here...
I use Canopy environment, it is like Anaconda which include Numpy and
it is detected when I did ./bootstrap.sh
[root@eric-pc boost_1_55_0]# ./bootstrap.sh --with-libraries=python,regex
Building Boost.Build engine with toolset gcc...
tools/build/v2/engine/bin.linuxx86_64/b2
Detecting Python version... 2.7
Detecting Python root... /root/Enthought/Canopy_64bit/User
Unicode/ICU support for Boost.Regex?... not found.
Generating Boost.Build configuration in project-config.jam...
Bootstrapping is done. To build, run:
./b2
To adjust configuration, edit 'project-config.jam'.
Further information:
- Command line help:
./b2 --help
- Getting started guide:
http://www.boost.org/more/getting_started/unix-variants.html
- Boost.Build documentation:
http://www.boost.org/boost-build2/doc/html/index.html
[root@eric-pc boost_1_55_0]#
But, when I performed ./b2 address-model=64 cflags=-fPIC
cxxflags=-fPIC Install I got errors of compilation with gcc (I use gcc
(GCC) 4.1.2 20080704 (Red Hat 4.1.2-54)) and should be ok (miminum
required gcc 3.3:
...failed gcc.compile.c++
bin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/threading-multi/object/function_doc_signature.o...
...skipped
<pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/threading-multi>libboost_python.a(clean)
for lack of
<pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/threading-multi>numeric.o...
...skipped
<pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/threading-multi>libboost_python.a
for lack of
<pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/threading-multi>numeric.o...
...skipped <p/usr/local/lib>libboost_python.a for lack of
<pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/threading-multi>libboost_python.a...
common.copy /usr/local/lib/libboost_regex.a
...failed updating 56 targets...
...skipped 6 targets...
...updated 3 targets...
Regards,
Enrico
Quoting Christos Kannas <chriskan...@gmail.com>:
> Hi Enrico,
>
> The latest version of RDKit does not require flex or bison, thankfully.
>
> In the attached file I list the commands that I used to build CMake
> (2.8.12.2), Boost libraries (1.55) and RDKit (2014_03_1) on a CentOS 5.10
> VM.
> In my case I was using an Anaconda Python environment so I didn't have to
> install NumPy, since it is bundled to it.
>
> Best,
>
> Christos
>
> Christos Kannas
>
> Researcher
> Ph.D Student
>
> Mob (UK): +44 (0) 7447700937
> Mob (Cyprus): +357 99530608
>
> [image: View Christos Kannas's profile on LinkedIn]
> <http://cy.linkedin.com/in/christoskannas>
>
>
> On 24 July 2014 10:05, Enrico Perspicace <e.perspic...@mx.uni-saarland.de>
> wrote:
>
>>
>> Dear all,
>>
>> I would like to install RDKit 2014 on Centos 5.10 (Final) but I did not
>> succeed!
>>
>> I follow Instructions for Installation on RDKIT website but I got an error
>> when I used cmake command line...
>>
>> Indeed, cmake is not able to find boost_python library.
>>
>> I installed: Python 2.7, atlas, lapack, blas, fftw3, numpy 1.8 via canopy
>> 1.4.1 (and is working with python import numpy), boost 1.55, flex 2.5.35
>> and bison 3.0.2 before performing the RDKit installation.
>>
>> I followed the procedure described here: https://www.mail-archive.com/
>> rdkit-discuss@lists.sourceforge.net/msg01376.html
>>
>> Please find in attached document related files which describe my problem.
>>
>> Thanks a lot for you help.
>>
>> Best regards,
>>
>> Enrico Perspicace
>>
>>
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