Dear Christos, Thanks for your reply. I already tried but it didn't work... I downloaded yesterday Centos 6.5 and I will install it. I hope to get less problem with this version as RDKit is available using rpm package. I will let you know if I will succeed or not ;-)
Best regards, Enrico Christos Kannas <chriskan...@gmail.com> a écrit : > Enrico, > > According to Boost web site ( > http://www.boost.org/doc/libs/1_55_0/libs/log/doc/html/log/installation.html) > it has been tested and working with gcc 4.5+. > Try to update your gcc and gcc-c++ to the latest versions available... I > know CentOS is not up to date... > At the moment I do not recall if I did any update to gcc. > I will get back to you on Monday for this, except if you are in a hurry > I'll go from the office tomorrow to check my dev machine. > > Best, > > Christos > > Christos Kannas > > Researcher > Ph.D Student > > Mob (UK): +44 (0) 7447700937 > Mob (Cyprus): +357 99530608 > > [image: View Christos Kannas's profile on LinkedIn] > <http://cy.linkedin.com/in/christoskannas> > > > On 24 July 2014 15:02, Enrico Perspicace <e.perspic...@mx.uni-saarland.de> > wrote: > >> Hi Christos, >> >> Thanks for your help. >> >> I tried what you said but I got an error with boost. >> >> I think the problem came from here... >> >> I use Canopy environment, it is like Anaconda which include Numpy and it >> is detected when I did ./bootstrap.sh >> >> [root@eric-pc boost_1_55_0]# ./bootstrap.sh --with-libraries=python,regex >> Building Boost.Build engine with toolset gcc... tools/build/v2/engine/bin. >> linuxx86_64/b2 >> Detecting Python version... 2.7 >> Detecting Python root... /root/Enthought/Canopy_64bit/User >> Unicode/ICU support for Boost.Regex?... not found. >> Generating Boost.Build configuration in project-config.jam... >> >> Bootstrapping is done. To build, run: >> >> ./b2 >> >> To adjust configuration, edit 'project-config.jam'. >> Further information: >> >> - Command line help: >> ./b2 --help >> >> - Getting started guide: >> http://www.boost.org/more/getting_started/unix-variants.html >> >> - Boost.Build documentation: >> http://www.boost.org/boost-build2/doc/html/index.html >> >> [root@eric-pc boost_1_55_0]# >> >> But, when I performed ./b2 address-model=64 cflags=-fPIC cxxflags=-fPIC >> Install I got errors of compilation with gcc (I use gcc (GCC) 4.1.2 >> 20080704 (Red Hat 4.1.2-54)) and should be ok (miminum required gcc 3.3: >> >> ...failed gcc.compile.c++ bin.v2/libs/python/build/gcc- >> 4.1.2/release/address-model-64/link-static/threading- >> multi/object/function_doc_signature.o... >> ...skipped <pbin.v2/libs/python/build/gcc-4.1.2/release/address- >> model-64/link-static/threading-multi>libboost_python.a(clean) for lack of >> <pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/ >> threading-multi>numeric.o... >> ...skipped <pbin.v2/libs/python/build/gcc-4.1.2/release/address- >> model-64/link-static/threading-multi>libboost_python.a for lack of >> <pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/ >> threading-multi>numeric.o... >> ...skipped <p/usr/local/lib>libboost_python.a for lack of >> <pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/ >> threading-multi>libboost_python.a... >> common.copy /usr/local/lib/libboost_regex.a >> ...failed updating 56 targets... >> ...skipped 6 targets... >> ...updated 3 targets... >> >> >> Regards, >> >> Enrico >> >> >> >> Quoting Christos Kannas <chriskan...@gmail.com>: >> >> Hi Enrico, >>> >>> The latest version of RDKit does not require flex or bison, thankfully. >>> >>> In the attached file I list the commands that I used to build CMake >>> (2.8.12.2), Boost libraries (1.55) and RDKit (2014_03_1) on a CentOS 5.10 >>> VM. >>> In my case I was using an Anaconda Python environment so I didn't have to >>> install NumPy, since it is bundled to it. >>> >>> Best, >>> >>> Christos >>> >>> Christos Kannas >>> >>> Researcher >>> Ph.D Student >>> >>> Mob (UK): +44 (0) 7447700937 >>> Mob (Cyprus): +357 99530608 >>> >>> [image: View Christos Kannas's profile on LinkedIn] >>> <http://cy.linkedin.com/in/christoskannas> >>> >>> >>> >>> On 24 July 2014 10:05, Enrico Perspicace <e.perspic...@mx.uni-saarland.de >>> > >>> wrote: >>> >>> >>>> Dear all, >>>> >>>> I would like to install RDKit 2014 on Centos 5.10 (Final) but I did not >>>> succeed! >>>> >>>> I follow Instructions for Installation on RDKIT website but I got an >>>> error >>>> when I used cmake command line... >>>> >>>> Indeed, cmake is not able to find boost_python library. >>>> >>>> I installed: Python 2.7, atlas, lapack, blas, fftw3, numpy 1.8 via canopy >>>> 1.4.1 (and is working with python import numpy), boost 1.55, flex 2.5.35 >>>> and bison 3.0.2 before performing the RDKit installation. >>>> >>>> I followed the procedure described here: https://www.mail-archive.com/ >>>> rdkit-discuss@lists.sourceforge.net/msg01376.html >>>> >>>> Please find in attached document related files which describe my problem. >>>> >>>> Thanks a lot for you help. >>>> >>>> Best regards, >>>> >>>> Enrico Perspicace >>>> >>>> >>>> ------------------------------------------------------------ >>>> ------------------ >>>> Want fast and easy access to all the code in your enterprise? Index and >>>> search up to 200,000 lines of code with a free copy of Black Duck >>>> Code Sight - the same software that powers the world's largest code >>>> search on Ohloh, the Black Duck Open Hub! Try it now. >>>> http://p.sf.net/sfu/bds >>>> _______________________________________________ >>>> Rdkit-discuss mailing list >>>> Rdkit-discuss@lists.sourceforge.net >>>> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >>>> >>>> >>>> >> >> >> ------------------------------------------------------------------------------ Want fast and easy access to all the code in your enterprise? Index and search up to 200,000 lines of code with a free copy of Black Duck Code Sight - the same software that powers the world's largest code search on Ohloh, the Black Duck Open Hub! Try it now. http://p.sf.net/sfu/bds _______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
