Just as Christos said: you're missing boost path in LD_LIBRARY_PATH
----
Pozdrawiam, | Best regards,
Maciek Wójcikowski
mac...@wojcikowski.pl
2014-07-28 15:53 GMT+02:00 Enrico Perspicace <
e.perspic...@mx.uni-saarland.de>:
> Dear Greg,
>
> Thanks for your help.
>
> I have this:
> [root@Pc-Eric-linux build]# python -c 'from rdkit import rdBase'
> Traceback (most recent call last):
> File "<string>", line 1, in <module>
> ImportError: libboost_python.so.1.55.0: cannot open shared object
> file: No such file or directory
> [root@Pc-Eric-linux build]#
>
>
> and
>
> [root@Pc-Eric-linux build]# ldd $RDBASE/rdkit/rdBase.so
> linux-vdso.so.1 => (0x00007fffe57ff000)
> libRDGeneral.so.1 =>
> /opt/RDKit/RDKit_2014_03_1/lib/libRDGeneral.so.1
> (0x00007ff4d1392000)
> libRDBoost.so.1 => /opt/RDKit/RDKit_2014_03_1/lib/libRDBoost.so.1
> (0x00007ff4d0fc6000)
> libboost_python.so.1.55.0 => not found
> libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00007ff4d0cae000)
> libm.so.6 => /opt/anaconda/lib/libm.so.6 (0x00007ff4d0a2a000)
> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007ff4d0814000)
> libc.so.6 => /lib64/libc.so.6 (0x00007ff4d0480000)
> /lib64/ld-linux-x86-64.so.2 (0x0000003148e00000)
> libboost_python.so.1.55.0 => not found
> [root@Pc-Eric-linux build]#
>
> What do you think?
>
> Thanks
>
> Enrico
>
>
>
> Greg Landrum <greg.land...@gmail.com> a écrit :
>
> > given that the failures are all for python tests, I guess you don't have
> > your PYTHONPATH set properly or that there's an LD_LIBRARY_PATH problem.
> >
> > What do you get when you run these two commands?
> >
> > python -c 'from rdkit import rdBase'
> >
> > ldd $RDBASE/rdkit/rdBase.so
> >
> >
> > -greg
> >
> >
> >
> >
> >
> > -greg
> >
> >
> >
> > On Mon, Jul 28, 2014 at 12:13 PM, Enrico Perspicace <
> > e.perspic...@mx.uni-saarland.de> wrote:
> >
> >> Dear Christos,
> >>
> >> I'm back... So I upgraded my old Centos with Centos 6.5 and I updated
> it.
> >> I installed all packages needed as recommended on RDKit website
> >> followed by anaconda environment (which include Numpy) as you did.
> >> Now, I get no errors up to the test of the compilation of RDKit.
> >> Indeed, compilation of RDKit worked but now, after ctest I have some
> >> fails...
> >>
> >> I did first:
> >> [root@Pc-Eric-linux build]# cmake -D
> >> PYTHON_LIBRARY=/opt/anaconda/lib/python2.7/config/libpython2.7.a -D
> >> PYTHON_INCLUDE_DIR=/opt/anaconda/include/python2.7/ -D
> >> PYTHON_EXECUTABLE=/opt/anaconda/bin/python2.7 -D
> >> BOOST_ROOT=/opt/boost/boost_1_55_0 ..
> >> -- The C compiler identification is GNU 4.4.7
> >> -- The CXX compiler identification is GNU 4.4.7
> >> -- Check for working C compiler: /usr/bin/cc
> >> -- Check for working C compiler: /usr/bin/cc -- works
> >> -- Detecting C compiler ABI info
> >> -- Detecting C compiler ABI info - done
> >> -- Check for working CXX compiler: /usr/bin/c++
> >> -- Check for working CXX compiler: /usr/bin/c++ -- works
> >> -- Detecting CXX compiler ABI info
> >> -- Detecting CXX compiler ABI info - done
> >> -- Check if the system is big endian
> >> -- Searching 16 bit integer
> >> -- Looking for sys/types.h
> >> -- Looking for sys/types.h - found
> >> -- Looking for stdint.h
> >> -- Looking for stdint.h - found
> >> -- Looking for stddef.h
> >> -- Looking for stddef.h - found
> >> -- Check size of unsigned short
> >> -- Check size of unsigned short - done
> >> -- Using unsigned short
> >> -- Check if the system is big endian - little endian
> >> -- Found PythonLibs: /opt/anaconda/lib/python2.7/config/libpython2.7.a
> >> (found version "2.7.7")
> >> -- Found PythonInterp: /opt/anaconda/bin/python2.7 (found version
> "2.7.7")
> >> -- Boost version: 1.55.0
> >> -- Found the following Boost libraries:
> >> -- python
> >> -- Looking for include file pthread.h
> >> -- Looking for include file pthread.h - found
> >> -- Looking for pthread_create
> >> -- Looking for pthread_create - not found
> >> -- Looking for pthread_create in pthreads
> >> -- Looking for pthread_create in pthreads - not found
> >> -- Looking for pthread_create in pthread
> >> -- Looking for pthread_create in pthread - found
> >> -- Found Threads: TRUE
> >> -- Boost version: 1.55.0
> >> -- Found the following Boost libraries:
> >> -- regex
> >> -- Configuring done
> >> -- Generating done
> >> -- Build files have been written to: /opt/RDKit/RDKit_2014_03_1/build
> >> [root@Pc-Eric-linux build]#
> >>
> >> Then
> >>
> >> [root@Pc-Eric-linux build]# make
> >> [root@Pc-Eric-linux build]# make install
> >>
> >> RDKit is compiling correctly withour errors. I just had sometimes this
> >> warning:
> >>
> >> [ 46%] Building CXX object
> >> Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o
> >> Dans le fichier inclus à partir de
> >>
> >>
> /opt/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761,
> >> à partir de
> >>
> >>
> /opt/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
> >> à partir de
> >>
> >>
> /opt/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
> >> à partir de
> >> /opt/RDKit/RDKit_2014_03_1/Code/DataStructs/Wrap/DataStructs.cpp:20:
> >>
> /opt/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
> >> attention : #warning "Using deprecated NumPy API, disable it by "
> >> "#defining NPY_NO_DEPRECATED_API
> >> NPY_1_7_API_VERSION"
> >>
> >> Finally, I ran ctest:
> >>
> >> [root@Pc-Eric-linux build]# ctest
> >>
> >> And I got:
> >>
> >> Test project /opt/RDKit/RDKit_2014_03_1/build
> >> Start 1: testDict
> >> 1/78 Test #1: testDict ......................... Passed 0.03 sec
> >> Start 2: testDataStructs
> >> 2/78 Test #2: testDataStructs .................. Passed 0.01 sec
> >> Start 3: pyBV
> >> 3/78 Test #3: pyBV .............................***Failed 0.02 sec
> >> Start 4: pyDiscreteValueVect
> >> 4/78 Test #4: pyDiscreteValueVect ..............***Failed 0.03 sec
> >> Start 5: pySparseIntVect
> >> 5/78 Test #5: pySparseIntVect ..................***Failed 0.03 sec
> >> Start 6: testTransforms
> >> 6/78 Test #6: testTransforms ................... Passed 0.01 sec
> >> Start 7: testGrid
> >> 7/78 Test #7: testGrid ......................... Passed 0.03 sec
> >> Start 8: testPyGeometry
> >> 8/78 Test #8: testPyGeometry ...................***Failed 0.04 sec
> >> Start 9: testMatrices
> >> 9/78 Test #9: testMatrices ..................... Passed 0.00 sec
> >> Start 10: testAlignment
> >> 10/78 Test #10: testAlignment .................... Passed 0.00 sec
> >> Start 11: pyAlignment
> >> 11/78 Test #11: pyAlignment ......................***Failed 0.02 sec
> >> Start 12: testOptimizer
> >> 12/78 Test #12: testOptimizer .................... Passed 0.01 sec
> >> Start 13: testUFFForceField
> >> 13/78 Test #13: testUFFForceField ................ Passed 0.05 sec
> >> Start 14: testMMFFForceField
> >> 14/78 Test #14: testMMFFForceField ............... Passed 17.79 sec
> >> Start 15: pyForceFieldConstraints
> >> 15/78 Test #15: pyForceFieldConstraints ..........***Failed 0.03 sec
> >> Start 16: testDistGeom
> >> 16/78 Test #16: testDistGeom ..................... Passed 0.00 sec
> >> Start 17: pyDistGeom
> >> 17/78 Test #17: pyDistGeom .......................***Failed 0.10 sec
> >> Start 18: graphmolTest1
> >> 18/78 Test #18: graphmolTest1 .................... Passed 0.14 sec
> >> Start 19: graphmolcpTest
> >> 19/78 Test #19: graphmolcpTest ................... Passed 0.02 sec
> >> Start 20: graphmolqueryTest
> >> 20/78 Test #20: graphmolqueryTest ................ Passed 0.02 sec
> >> Start 21: graphmolMolOpsTest
> >> 21/78 Test #21: graphmolMolOpsTest ............... Passed 1.81 sec
> >> Start 22: graphmoltestCanon
> >> 22/78 Test #22: graphmoltestCanon ................ Passed 0.00 sec
> >> Start 23: graphmoltestChirality
> >> 23/78 Test #23: graphmoltestChirality ............ Passed 0.04 sec
> >> Start 24: graphmoltestPickler
> >> 24/78 Test #24: graphmoltestPickler .............. Passed 0.37 sec
> >> Start 25: graphmolIterTest
> >> 25/78 Test #25: graphmolIterTest ................. Passed 0.02 sec
> >> Start 26: testDepictor
> >> 26/78 Test #26: testDepictor ..................... Passed 0.41 sec
> >> Start 27: pyDepictor
> >> 27/78 Test #27: pyDepictor .......................***Failed 0.02 sec
> >> Start 28: smiTest1
> >> 28/78 Test #28: smiTest1 ......................... Passed 0.27 sec
> >> Start 29: smaTest1
> >> 29/78 Test #29: smaTest1 ......................... Passed 1.39 sec
> >> Start 30: fileParsersTest1
> >> 30/78 Test #30: fileParsersTest1 ................. Passed 7.46 sec
> >> Start 31: testMolSupplier
> >> 31/78 Test #31: testMolSupplier .................. Passed 0.18 sec
> >> Start 32: testMolWriter
> >> 32/78 Test #32: testMolWriter .................... Passed 0.41 sec
> >> Start 33: testTplParser
> >> 33/78 Test #33: testTplParser .................... Passed 0.02 sec
> >> Start 34: testMol2ToMol
> >> 34/78 Test #34: testMol2ToMol .................... Passed 0.02 sec
> >> Start 35: testSubstructMatch
> >> 35/78 Test #35: testSubstructMatch ............... Passed 0.02 sec
> >> Start 36: testReaction
> >> 36/78 Test #36: testReaction ..................... Passed 0.08 sec
> >> Start 37: pyChemReactions
> >> 37/78 Test #37: pyChemReactions ..................***Failed 0.02 sec
> >> Start 38: testChemTransforms
> >> 38/78 Test #38: testChemTransforms ............... Passed 0.07 sec
> >> Start 39: testSubgraphs1
> >> 39/78 Test #39: testSubgraphs1 ................... Passed 0.37 sec
> >> Start 40: testSubgraphs2
> >> 40/78 Test #40: testSubgraphs2 ................... Passed 0.02 sec
> >> Start 41: testFragCatalog
> >> 41/78 Test #41: testFragCatalog .................. Passed 1.19 sec
> >> Start 42: pyFragCatalog
> >> 42/78 Test #42: pyFragCatalog ....................***Failed 0.03 sec
> >> Start 43: testDescriptors
> >> 43/78 Test #43: testDescriptors .................. Passed 0.24 sec
> >> Start 44: pyMolDescriptors
> >> 44/78 Test #44: pyMolDescriptors .................***Failed 0.02 sec
> >> Start 45: testFingerprints
> >> 45/78 Test #45: testFingerprints ................. Passed 0.20 sec
> >> Start 46: pyPartialCharges
> >> 46/78 Test #46: pyPartialCharges .................***Failed 0.02 sec
> >> Start 47: testMolTransforms
> >> 47/78 Test #47: testMolTransforms ................ Passed 0.02 sec
> >> Start 48: pyMolTransforms
> >> 48/78 Test #48: pyMolTransforms ..................***Failed 0.02 sec
> >> Start 49: testMMFFForceFieldHelpers
> >> 49/78 Test #49: testMMFFForceFieldHelpers ........ Passed 0.65 sec
> >> Start 50: testUFFForceFieldHelpers
> >> 50/78 Test #50: testUFFForceFieldHelpers ......... Passed 1.51 sec
> >> Start 51: pyForceFieldHelpers
> >> 51/78 Test #51: pyForceFieldHelpers ..............***Failed 0.02 sec
> >> Start 52: testDistGeomHelpers
> >> 52/78 Test #52: testDistGeomHelpers .............. Passed 0.89 sec
> >> Start 53: pyDistGeom
> >> 53/78 Test #53: pyDistGeom .......................***Failed 0.02 sec
> >> Start 54: testMolAlign
> >> 54/78 Test #54: testMolAlign ..................... Passed 3.97 sec
> >> Start 55: pyMolAlign
> >> 55/78 Test #55: pyMolAlign .......................***Failed 0.03 sec
> >> Start 56: testFeatures
> >> 56/78 Test #56: testFeatures ..................... Passed 0.02 sec
> >> Start 57: pyChemicalFeatures
> >> 57/78 Test #57: pyChemicalFeatures ...............***Failed 0.02 sec
> >> Start 58: testShapeHelpers
> >> 58/78 Test #58: testShapeHelpers ................. Passed 0.02 sec
> >> Start 59: pyShapeHelpers
> >> 59/78 Test #59: pyShapeHelpers ...................***Failed 0.03 sec
> >> Start 60: testMolCatalog
> >> 60/78 Test #60: testMolCatalog ................... Passed 0.02 sec
> >> Start 61: pyMolCatalog
> >> 61/78 Test #61: pyMolCatalog .....................***Failed 0.03 sec
> >> Start 62: testSLNParse
> >> 62/78 Test #62: testSLNParse ..................... Passed 0.03 sec
> >> Start 63: pySLNParse
> >> 63/78 Test #63: pySLNParse .......................***Failed 0.01 sec
> >> Start 64: pyGraphMolWrap
> >> 64/78 Test #64: pyGraphMolWrap ...................***Failed 0.04 sec
> >> Start 65: pyTestConformerWrap
> >> 65/78 Test #65: pyTestConformerWrap ..............***Failed 0.02 sec
> >> Start 66: testQuery
> >> 66/78 Test #66: testQuery ........................ Passed 0.00 sec
> >> Start 67: testMatCalc
> >> 67/78 Test #67: testMatCalc ...................... Passed 0.00 sec
> >> Start 68: pyMatCalc
> >> 68/78 Test #68: pyMatCalc ........................***Failed 0.03 sec
> >> Start 69: pyRanker
> >> 69/78 Test #69: pyRanker .........................***Failed 0.03 sec
> >> Start 70: testChemicalFeatures
> >> 70/78 Test #70: testChemicalFeatures ............. Passed 0.01 sec
> >> Start 71: pyFeatures
> >> 71/78 Test #71: pyFeatures .......................***Failed 0.02 sec
> >> Start 72: pythonTestDbCLI
> >> 72/78 Test #72: pythonTestDbCLI ..................***Failed 0.23 sec
> >> Start 73: pythonTestDirML
> >> 73/78 Test #73: pythonTestDirML ..................***Failed 3.34 sec
> >> Start 74: pythonTestDirDataStructs
> >> 74/78 Test #74: pythonTestDirDataStructs ......... Passed 0.02 sec
> >> Start 75: pythonTestDirDbase
> >> 75/78 Test #75: pythonTestDirDbase ............... Passed 0.02 sec
> >> Start 76: pythonTestDirSimDivFilters
> >> 76/78 Test #76: pythonTestDirSimDivFilters ....... Passed 0.02 sec
> >> Start 77: pythonTestDirVLib
> >> 77/78 Test #77: pythonTestDirVLib ................ Passed 0.01 sec
> >> Start 78: pythonTestDirChem
> >> 78/78 Test #78: pythonTestDirChem ................***Failed 2.26 sec
> >>
> >> 64% tests passed, 28 tests failed out of 78
> >>
> >> Total Test time (real) = 46.52 sec
> >>
> >> The following tests FAILED:
> >> 3 - pyBV (Failed)
> >> 4 - pyDiscreteValueVect (Failed)
> >> 5 - pySparseIntVect (Failed)
> >> 8 - testPyGeometry (Failed)
> >> 11 - pyAlignment (Failed)
> >> 15 - pyForceFieldConstraints (Failed)
> >> 17 - pyDistGeom (Failed)
> >> 27 - pyDepictor (Failed)
> >> 37 - pyChemReactions (Failed)
> >> 42 - pyFragCatalog (Failed)
> >> 44 - pyMolDescriptors (Failed)
> >> 46 - pyPartialCharges (Failed)
> >> 48 - pyMolTransforms (Failed)
> >> 51 - pyForceFieldHelpers (Failed)
> >> 53 - pyDistGeom (Failed)
> >> 55 - pyMolAlign (Failed)
> >> 57 - pyChemicalFeatures (Failed)
> >> 59 - pyShapeHelpers (Failed)
> >> 61 - pyMolCatalog (Failed)
> >> 63 - pySLNParse (Failed)
> >> 64 - pyGraphMolWrap (Failed)
> >> 65 - pyTestConformerWrap (Failed)
> >> 68 - pyMatCalc (Failed)
> >> 69 - pyRanker (Failed)
> >> 71 - pyFeatures (Failed)
> >> 72 - pythonTestDbCLI (Failed)
> >> 73 - pythonTestDirML (Failed)
> >> 78 - pythonTestDirChem (Failed)
> >> Errors while running CTest
> >> [root@Pc-Eric-linux build]#
> >>
> >> I set variables environment as follow:
> >> export RDBASE=/opt/RDKit/RDKit_2013_09_2/
> >> export LD_LIBRARY_PATH=$RDBASE/lib
> >> export PYTHONPATH=$RDBASE
> >>
> >> What I did wrong?
> >>
> >> Do you have any idea?
> >>
> >> Thanks in advance for you reply.
> >>
> >> Best regards,
> >>
> >> Enrico
> >>
> >>
> >>
> >>
> >> Enrico Perspicace <e.perspic...@mx.uni-saarland.de> a écrit :
> >>
> >> > Dear Christos,
> >> >
> >> > Thanks for your reply.
> >> > I already tried but it didn't work...
> >> > I downloaded yesterday Centos 6.5 and I will install it.
> >> > I hope to get less problem with this version as RDKit is available
> >> > using rpm package.
> >> > I will let you know if I will succeed or not ;-)
> >> >
> >> > Best regards,
> >> >
> >> > Enrico
> >> >
> >> >
> >> > Christos Kannas <chriskan...@gmail.com> a écrit :
> >> >
> >> >> Enrico,
> >> >>
> >> >> According to Boost web site (
> >> >>
> >>
> http://www.boost.org/doc/libs/1_55_0/libs/log/doc/html/log/installation.html
> >> )
> >> >> it has been tested and working with gcc 4.5+.
> >> >> Try to update your gcc and gcc-c++ to the latest versions
> available... I
> >> >> know CentOS is not up to date...
> >> >> At the moment I do not recall if I did any update to gcc.
> >> >> I will get back to you on Monday for this, except if you are in a
> hurry
> >> >> I'll go from the office tomorrow to check my dev machine.
> >> >>
> >> >> Best,
> >> >>
> >> >> Christos
> >> >>
> >> >> Christos Kannas
> >> >>
> >> >> Researcher
> >> >> Ph.D Student
> >> >>
> >> >> Mob (UK): +44 (0) 7447700937
> >> >> Mob (Cyprus): +357 99530608
> >> >>
> >> >> [image: View Christos Kannas's profile on LinkedIn]
> >> >> <http://cy.linkedin.com/in/christoskannas>
> >> >>
> >> >>
> >> >> On 24 July 2014 15:02, Enrico Perspicace <
> >> e.perspic...@mx.uni-saarland.de>
> >> >> wrote:
> >> >>
> >> >>> Hi Christos,
> >> >>>
> >> >>> Thanks for your help.
> >> >>>
> >> >>> I tried what you said but I got an error with boost.
> >> >>>
> >> >>> I think the problem came from here...
> >> >>>
> >> >>> I use Canopy environment, it is like Anaconda which include Numpy
> and
> >> it
> >> >>> is detected when I did ./bootstrap.sh
> >> >>>
> >> >>> [root@eric-pc boost_1_55_0]# ./bootstrap.sh
> >> --with-libraries=python,regex
> >> >>> Building Boost.Build engine with toolset gcc...
> >> tools/build/v2/engine/bin.
> >> >>> linuxx86_64/b2
> >> >>> Detecting Python version... 2.7
> >> >>> Detecting Python root... /root/Enthought/Canopy_64bit/User
> >> >>> Unicode/ICU support for Boost.Regex?... not found.
> >> >>> Generating Boost.Build configuration in project-config.jam...
> >> >>>
> >> >>> Bootstrapping is done. To build, run:
> >> >>>
> >> >>> ./b2
> >> >>>
> >> >>> To adjust configuration, edit 'project-config.jam'.
> >> >>> Further information:
> >> >>>
> >> >>> - Command line help:
> >> >>> ./b2 --help
> >> >>>
> >> >>> - Getting started guide:
> >> >>> http://www.boost.org/more/getting_started/unix-variants.html
> >> >>>
> >> >>> - Boost.Build documentation:
> >> >>> http://www.boost.org/boost-build2/doc/html/index.html
> >> >>>
> >> >>> [root@eric-pc boost_1_55_0]#
> >> >>>
> >> >>> But, when I performed ./b2 address-model=64 cflags=-fPIC
> cxxflags=-fPIC
> >> >>> Install I got errors of compilation with gcc (I use gcc (GCC) 4.1.2
> >> >>> 20080704 (Red Hat 4.1.2-54)) and should be ok (miminum required gcc
> >> 3.3:
> >> >>>
> >> >>> ...failed gcc.compile.c++ bin.v2/libs/python/build/gcc-
> >> >>> 4.1.2/release/address-model-64/link-static/threading-
> >> >>> multi/object/function_doc_signature.o...
> >> >>> ...skipped <pbin.v2/libs/python/build/gcc-4.1.2/release/address-
> >> >>> model-64/link-static/threading-multi>libboost_python.a(clean) for
> lack
> >> of
> >> >>>
> >>
> <pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/
> >> >>> threading-multi>numeric.o...
> >> >>> ...skipped <pbin.v2/libs/python/build/gcc-4.1.2/release/address-
> >> >>> model-64/link-static/threading-multi>libboost_python.a for lack of
> >> >>>
> >>
> <pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/
> >> >>> threading-multi>numeric.o...
> >> >>> ...skipped <p/usr/local/lib>libboost_python.a for lack of
> >> >>>
> >>
> <pbin.v2/libs/python/build/gcc-4.1.2/release/address-model-64/link-static/
> >> >>> threading-multi>libboost_python.a...
> >> >>> common.copy /usr/local/lib/libboost_regex.a
> >> >>> ...failed updating 56 targets...
> >> >>> ...skipped 6 targets...
> >> >>> ...updated 3 targets...
> >> >>>
> >> >>>
> >> >>> Regards,
> >> >>>
> >> >>> Enrico
> >> >>>
> >> >>>
> >> >>>
> >> >>> Quoting Christos Kannas <chriskan...@gmail.com>:
> >> >>>
> >> >>> Hi Enrico,
> >> >>>>
> >> >>>> The latest version of RDKit does not require flex or bison,
> >> thankfully.
> >> >>>>
> >> >>>> In the attached file I list the commands that I used to build CMake
> >> >>>> (2.8.12.2), Boost libraries (1.55) and RDKit (2014_03_1) on a
> CentOS
> >> 5.10
> >> >>>> VM.
> >> >>>> In my case I was using an Anaconda Python environment so I didn't
> >> have to
> >> >>>> install NumPy, since it is bundled to it.
> >> >>>>
> >> >>>> Best,
> >> >>>>
> >> >>>> Christos
> >> >>>>
> >> >>>> Christos Kannas
> >> >>>>
> >> >>>> Researcher
> >> >>>> Ph.D Student
> >> >>>>
> >> >>>> Mob (UK): +44 (0) 7447700937
> >> >>>> Mob (Cyprus): +357 99530608
> >> >>>>
> >> >>>> [image: View Christos Kannas's profile on LinkedIn]
> >> >>>> <http://cy.linkedin.com/in/christoskannas>
> >> >>>>
> >> >>>>
> >> >>>>
> >> >>>> On 24 July 2014 10:05, Enrico Perspicace <
> >> e.perspic...@mx.uni-saarland.de
> >> >>>> >
> >> >>>> wrote:
> >> >>>>
> >> >>>>
> >> >>>>> Dear all,
> >> >>>>>
> >> >>>>> I would like to install RDKit 2014 on Centos 5.10 (Final) but I
> did
> >> not
> >> >>>>> succeed!
> >> >>>>>
> >> >>>>> I follow Instructions for Installation on RDKIT website but I got
> an
> >> >>>>> error
> >> >>>>> when I used cmake command line...
> >> >>>>>
> >> >>>>> Indeed, cmake is not able to find boost_python library.
> >> >>>>>
> >> >>>>> I installed: Python 2.7, atlas, lapack, blas, fftw3, numpy 1.8 via
> >> canopy
> >> >>>>> 1.4.1 (and is working with python import numpy), boost 1.55, flex
> >> 2.5.35
> >> >>>>> and bison 3.0.2 before performing the RDKit installation.
> >> >>>>>
> >> >>>>> I followed the procedure described here:
> >> https://www.mail-archive.com/
> >> >>>>> rdkit-discuss@lists.sourceforge.net/msg01376.html
> >> >>>>>
> >> >>>>> Please find in attached document related files which describe my
> >> problem.
> >> >>>>>
> >> >>>>> Thanks a lot for you help.
> >> >>>>>
> >> >>>>> Best regards,
> >> >>>>>
> >> >>>>> Enrico Perspicace
> >> >>>>>
> >> >>>>>
> >> >>>>> ------------------------------------------------------------
> >> >>>>> ------------------
> >> >>>>> Want fast and easy access to all the code in your enterprise?
> Index
> >> and
> >> >>>>> search up to 200,000 lines of code with a free copy of Black Duck
> >> >>>>> Code Sight - the same software that powers the world's largest
> code
> >> >>>>> search on Ohloh, the Black Duck Open Hub! Try it now.
> >> >>>>> http://p.sf.net/sfu/bds
> >> >>>>> _______________________________________________
> >> >>>>> Rdkit-discuss mailing list
> >> >>>>> Rdkit-discuss@lists.sourceforge.net
> >> >>>>> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
> >> >>>>>
> >> >>>>>
> >> >>>>>
> >> >>>
> >> >>>
> >> >>>
> >> >
> >> >
> >> >
> >> >
> >> >
> >>
> ------------------------------------------------------------------------------
> >> > Want fast and easy access to all the code in your enterprise? Index
> and
> >> > search up to 200,000 lines of code with a free copy of Black Duck
> >> > Code Sight - the same software that powers the world's largest code
> >> > search on Ohloh, the Black Duck Open Hub! Try it now.
> >> > http://p.sf.net/sfu/bds
> >> > _______________________________________________
> >> > Rdkit-discuss mailing list
> >> > Rdkit-discuss@lists.sourceforge.net
> >> > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
> >>
> >>
> >>
> >>
> >>
> >>
> ------------------------------------------------------------------------------
> >> Infragistics Professional
> >> Build stunning WinForms apps today!
> >> Reboot your WinForms applications with our WinForms controls.
> >> Build a bridge from your legacy apps to the future.
> >>
> >>
> http://pubads.g.doubleclick.net/gampad/clk?id=153845071&iu=/4140/ostg.clktrk
> >> _______________________________________________
> >> Rdkit-discuss mailing list
> >> Rdkit-discuss@lists.sourceforge.net
> >> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
> >>
>
>
>
>
>
> ------------------------------------------------------------------------------
> Infragistics Professional
> Build stunning WinForms apps today!
> Reboot your WinForms applications with our WinForms controls.
> Build a bridge from your legacy apps to the future.
>
> http://pubads.g.doubleclick.net/gampad/clk?id=153845071&iu=/4140/ostg.clktrk
> _______________________________________________
> Rdkit-discuss mailing list
> Rdkit-discuss@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
>
------------------------------------------------------------------------------
Infragistics Professional
Build stunning WinForms apps today!
Reboot your WinForms applications with our WinForms controls.
Build a bridge from your legacy apps to the future.
http://pubads.g.doubleclick.net/gampad/clk?id=153845071&iu=/4140/ostg.clktrk
_______________________________________________
Rdkit-discuss mailing list
Rdkit-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
