Dear Matthias, Thank you very much for the help, it worked!
Thanks, Jianping On Sat, Jun 3, 2023 at 7:48 PM Matthias Koeppe <matthiaskoe...@gmail.com> wrote: > Sage no longer ships a copy of R. To get rid of this build error, remove > rpy2 and traces of an old R installation in your tree: > "make rpy2-uninstall r-uninstall" > > Then run configure and make again > > On Saturday, June 3, 2023 at 4:35:46 PM UTC-7 Jianping Pan wrote: > >> Thank you Dima for pointing out the the right order to me. I tried that. >> Unfortunately the same error about dummy package r-none showed up again. >> >> Thanks, >> Jianping >> >> On Saturday, June 3, 2023 at 6:16:56 PM UTC-4 Dima Pasechnik wrote: >> >>> one thing is certain: >>> >>> source /Users/jianpingpan/sage/.homebrew-build-env >>> >>> should be invoked before ./configure, not after >>> >>> >>> On Sat, Jun 3, 2023 at 11:14 PM Jianping Pan <usapan...@gmail.com> >>> wrote: >>> > >>> > Dear Dima, >>> > >>> > Thank you for your help! I tried to re-run >>> > ./configure >>> > source /Users/jianpingpan/sage/.homebrew-build-env >>> > ./config.status --recheck >>> > ./config.status >>> > make build >>> > >>> > And then I got the same error message about r-none being a dummy >>> package. Thanks! >>> > >>> > Thanks, >>> > Jianping >>> > >>> > On Saturday, June 3, 2023 at 5:48:49 PM UTC-4 Dima Pasechnik wrote: >>> >> >>> >> after you have changed the build environment, you might need to >>> re-run >>> >> ./configure >>> >> and only then "make build" - the latter does not re-run ./configure >>> in >>> >> such cases. >>> >> >>> >> HTH >>> >> Dima >>> >> >>> >> On Sat, Jun 3, 2023 at 9:53 PM Jianping Pan <usapan...@gmail.com> >>> wrote: >>> >> > >>> >> > Dear Matthias, >>> >> > >>> >> > Thank you very much for your help and quick reply! I followed >>> instruction, actually I had to use sudo to delete jedi-0.18.1. When I run >>> "make build", I ran into another problem below. I attempted "brew install >>> r" then "make build" again, still, the same error message occur. Thanks! >>> >> > >>> >> > [r-none] Error: r is a dummy package and >>> >> > [r-none] cannot be installed using the Sage distribution. >>> >> > make[4]: *** [r-SAGE_LOCAL-no-deps] Error 1 >>> >> > make[3]: *** >>> [/Users/jianpingpan/sage/local/var/lib/sage/installed/r-none] Error 2 >>> >> > make[2]: *** [all-build] Error 2 >>> >> > >>> >> > real 0m0.532s >>> >> > user 0m0.344s >>> >> > sys 0m0.161s >>> >> > *************************************************************** >>> >> > Error building Sage. >>> >> > >>> >> > The following package(s) may have failed to build (not necessarily >>> >> > during this run of 'make all-build'): >>> >> > >>> >> > * package: r-none >>> >> > last build time: Jun 3 16:47 >>> >> > log file: /Users/jianpingpan/sage/logs/pkgs/r-none.log >>> >> > >>> >> > Thanks, >>> >> > Jianping >>> >> > >>> >> > On Saturday, June 3, 2023 at 2:11:38 PM UTC-4 Matthias Koeppe >>> wrote: >>> >> >> >>> >> >> Try removing the directory >>> /Users/jianpingpan/sage/local/var/tmp/sage/build/jedi-0.18.1 manually >>> >> >> using "rm -r >>> /Users/jianpingpan/sage/local/var/tmp/sage/build/jedi-0.18.1". >>> >> >> If this fails, check if there are any files that have unusual >>> ownership or permissions >>> >> >> >>> >> >> >>> >> >> On Saturday, June 3, 2023 at 10:20:11 AM UTC-7 Jianping Pan wrote: >>> >> >>> >>> >> >>> Dear Sage developers, >>> >> >>> >>> >> >>> I was trying to install sage 10.1.beta1 on my macOS 12.6.5 via >>> Git. I followed the instruction on git and ran >>> >> >>> "make configure", >>> >> >>> set "./configure --enable-download-from-upstream-url", >>> >> >>> ran "./configure", then brew installed all the packages that it >>> asked me to install. >>> >> >>> Then I run "make" >>> >> >>> >>> >> >>> Below is the error report and the two log files. Thanks! >>> >> >>> >>> >> >>> [jedi-0.18.1] ERROR: Failed cleaning build dir for jedi >>> >> >>> [jedi-0.18.1] Failed to build jedi >>> >> >>> [jedi-0.18.1] ERROR: Failed to build one or more wheels >>> >> >>> [jedi-0.18.1] >>> ******************************************************************************** >>> >>> >> >>> [jedi-0.18.1] Error building a wheel for jedi-0.18.1 >>> >> >>> [jedi-0.18.1] >>> ******************************************************************************** >>> >>> >> >>> [jedi-0.18.1] >>> >> >>> [jedi-0.18.1] real 0m16.162s >>> >> >>> [jedi-0.18.1] user 0m14.644s >>> >> >>> [jedi-0.18.1] sys 0m5.335s >>> >> >>> [jedi-0.18.1] >>> ************************************************************************ >>> >> >>> [jedi-0.18.1] Error installing package jedi-0.18.1 >>> >> >>> [jedi-0.18.1] >>> ************************************************************************ >>> >> >>> [jedi-0.18.1] Please email sage-devel ( >>> http://groups.google.com/group/sage-devel) >>> >> >>> [jedi-0.18.1] explaining the problem and including the log files >>> >> >>> [jedi-0.18.1] /Users/jianpingpan/sage/logs/pkgs/jedi-0.18.1.log >>> >> >>> [jedi-0.18.1] and >>> >> >>> [jedi-0.18.1] /Users/jianpingpan/sage/config.log >>> >> >>> [jedi-0.18.1] Describe your computer, operating system, etc. >>> >> >>> [jedi-0.18.1] If you want to try to fix the problem yourself, >>> *don't* just cd to >>> >> >>> [jedi-0.18.1] >>> /Users/jianpingpan/sage/local/var/tmp/sage/build/jedi-0.18.1 and type >>> 'make' or whatever is appropriate. >>> >> >>> [jedi-0.18.1] Instead, the following commands setup all >>> environment variables >>> >> >>> [jedi-0.18.1] correctly and load a subshell for you to debug the >>> error: >>> >> >>> [jedi-0.18.1] (cd >>> '/Users/jianpingpan/sage/local/var/tmp/sage/build/jedi-0.18.1' && >>> '/Users/jianpingpan/sage/sage' --buildsh) >>> >> >>> [jedi-0.18.1] When you are done debugging, you can type "exit" to >>> leave the subshell. >>> >> >>> [jedi-0.18.1] >>> ************************************************************************ >>> >> >>> make[4]: *** [jedi-SAGE_VENV-no-deps] Error 1 >>> >> >>> >>> >> >>> Thanks, >>> >> >>> Jianping >>> >> > >>> >> > -- >>> >> > You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> >> > To unsubscribe from this group and stop receiving emails from it, >>> send an email to sage-devel+...@googlegroups.com. >>> >> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/cfbaf68f-15fe-4264-a564-1a089fce489dn%40googlegroups.com. >>> >>> > >>> > -- >>> > You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-devel+...@googlegroups.com. >>> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/f00f6a68-b84b-410f-a27f-20be37424bfen%40googlegroups.com. >>> >>> >> -- > You received this message because you are subscribed to a topic in the > Google Groups "sage-devel" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/sage-devel/N3w5EgNsd4s/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/780f7be6-1302-4a43-834b-a38d4ebb1ee9n%40googlegroups.com > <https://groups.google.com/d/msgid/sage-devel/780f7be6-1302-4a43-834b-a38d4ebb1ee9n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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