[deal.II] Re: Installation error, unable to configure with p4est

2019-10-05 Thread vachan potluri
> > Yes, you can likely ignore the error. If you really want to run this > quicktest, you can change > make_quicktest("p4est" ${_mybuild} 10) > to > make_quicktest("p4est" ${_mybuild} 4) > in tests/quick_tests/CMakeLists.txt. This works. Thanks. -- The deal.II project is located at http://ww

Re: [deal.II] Re: Installation error, unable to configure with p4est

2019-10-05 Thread Daniel Arndt
Vachan, [...] > However, > make test > for p4est failed with the following message > There are not enough slots available in the system to satisfy the 10 slots > that were requested by the application: > ./p4est.debug > > Either request fewer slots for your application, or make more slots > avai

[deal.II] Re: Installation error, unable to configure with p4est

2019-10-04 Thread vachan potluri
Okay, I found the error. Some time back, I noted changing include/deal.II/base/config.h.in to include/deal.II/base/config.h (removed the .in). I don't remember exactly, but the reason I did this was because some error popped up while compiling one of the initial tutorials. This was my mistake. T

[deal.II] Re: Installation error, unable to configure with p4est

2019-10-04 Thread vachan potluri
Sorry for incomplete information, cmake exits with the following message. ### # # deal.II configuration: #CMAKE_BUILD_TYPE: DebugRelease #BUILD_SHARED_LIBS: ON #CMAKE_INSTALL_PREFIX: /home/vachan/bin/dealii #CMAKE_SOURCE_DIR: /home/vachan/dealii-

[deal.II] Re: Installation error

2018-10-03 Thread Bruno Turcksin
Hi, On Tuesday, October 2, 2018 at 1:55:40 PM UTC-4, rp...@snu.edu.in wrote: > > > > > > > > > > > > *[ 66%] Built target step-1[100%] Run step-1 with Debug > configuration./step-1: symbol lookup error: > /home/student/anaconda3/lib/libmkl_intel_lp64.so: undefined symbol: > mkl_lapack_dgetrfnpi

Re: [deal.II] Re: installation error

2018-01-26 Thread Wolfgang Bangerth
On 01/26/2018 06:59 AM, Juan Carlos Araujo Cabarcas wrote: From the dealii detailed.log I see that: MPI_VERSION = 2.1 OMPI_VERSION = 1.6.5 From the terminal: $ mpicc --version gcc (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 So it seems I need to upgrade to MPI 3.0. Thanks, for having a look at t

Re: [deal.II] Re: installation error

2018-01-26 Thread Juan Carlos Araujo Cabarcas
Hi, when I install PETSc I allow the configuration process to download the necessary libraries it needs: ./config/configure.py --with-shared=1 --with-x=0 --with-mpi=1 --with-scalar-type=complex --download-mumps --download-metis --download-parmetis --download-superlu_dist --download-blacs --do

Re: [deal.II] Re: installation error

2018-01-26 Thread Juan Carlos Araujo Cabarcas
Hi, when I install PETSc I allow the configuration process to download the necessary libraries it needs: ./config/configure.py --with-shared=1 --with-x=0 --with-mpi=1 --with-scalar-type=complex --download-mumps --download-metis --download-parmetis --download-superlu_dist --download-blacs --do

Re: [deal.II] Re: installation error

2018-01-25 Thread Wolfgang Bangerth
On 01/24/2018 07:34 AM, Juan Carlos Araujo Cabarcas wrote: Please find the file: detailed.log attached. El martes, 23 de enero de 2018, 17:02:14 (UTC-5), Wolfgang Bangerth escribió: On 01/23/2018 02:13 PM, Bruno Turcksin wrote: > >     mypath/dealii/source/lac/scalapack.cc:243:9

Re: [deal.II] Re: installation error

2018-01-24 Thread Juan Carlos Araujo Cabarcas
Please find the file: detailed.log attached. El martes, 23 de enero de 2018, 17:02:14 (UTC-5), Wolfgang Bangerth escribió: > > On 01/23/2018 02:13 PM, Bruno Turcksin wrote: > > > > mypath/dealii/source/lac/scalapack.cc:243:91: error: there are no > > arguments to ‘MPI_Comm_create_group

Re: [deal.II] Re: installation error

2018-01-23 Thread Wolfgang Bangerth
On 01/23/2018 02:13 PM, Bruno Turcksin wrote: mypath/dealii/source/lac/scalapack.cc:243:91: error: there are no arguments to ‘MPI_Comm_create_group’ that depend on a template parameter, so a declaration of ‘MPI_Comm_create_group’ must be available [-fpermissive] ierr = MP

[deal.II] Re: installation error

2018-01-23 Thread Bruno Turcksin
Juan Carlos On Tuesday, January 23, 2018 at 3:12:20 PM UTC-5, Juan Carlos Araujo Cabarcas wrote: > > [ 50%] Building CXX object > source/fe/CMakeFiles/obj_fe_debug.dir/fe_poly.cc.o > mypath/dealii/source/lac/scalapack.cc: In member function ‘void > dealii::ScaLAPACKMatrix::copy_to(dealii::ScaLA

Re: [deal.II] Re: Installation error, please help, thx!

2017-10-25 Thread Michael
You remind me that I need to replace all source files(I was using 8.5.0). So I download version 8.5.1 and get my problem solved. Thanks a lot, I really appreciate it. On Wednesday, October 25, 2017 at 10:20:23 PM UTC-5, Wolfgang Bangerth wrote: > > On 10/25/2017 08:52 PM, Michael wrote: > > >

Re: [deal.II] Re: Installation error, please help, thx!

2017-10-25 Thread Wolfgang Bangerth
On 10/25/2017 08:52 PM, Michael wrote: /home/superman/software/dealii-8.5.0/include/deal.II/lac/sparsity_pattern.h: In member function ‘dealii::SparsityPatternIterators::size_type dealii::SparsityPatternIterators::Accessor::row() const’: /home/superman/software/dealii-8.5.0/include/deal.II/lac/

Re: [deal.II] Re: Installation error, please help, thx!

2017-10-25 Thread Michael
Thanks, I did replaced original include/deal.II/lac/sparsity_pattern.h file by a new one from github. That was because I got errors during installation. I've tried again with a clean directory, and get those errors again, please take a look at make output file below. And please let me know if

Re: [deal.II] Re: Installation error, please help, thx!

2017-10-25 Thread Wolfgang Bangerth
On 10/25/2017 06:43 PM, Michael wrote: /home/superman/software/dealii-8.5.0/include/deal.II/lac/chunk_sparse_matrix.templates.h: In instantiation of ‘somenumber dealii::ChunkSparseMatrix::matrix_norm_square(const dealii::Vector&) const [with somenumber = double; number = double]’: /home/superma

[deal.II] Re: Installation error, please help, thx!

2017-10-25 Thread Daniel Arndt
Michael, can you just provide us with the full make output when starting from a clean build directory? Best, Daniel -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message bec

[deal.II] Re: Installation error

2017-10-23 Thread Bruno Turcksin
Lev, How many processors did you use when you compiled deal.II? The compiler may run out of memory and hit an internal error if you use too many processor. Can you try again using only one processor. Best, Bruno On Monday, October 23, 2017 at 9:07:40 PM UTC-4, Lev Karatun wrote: > > Hi everyo