mri_glmfit --y rh.ad_hv.area.10.mgh --fsgd
>> ad_hv.fsgd dods
>> --C group_diff.mtx --surf fsaverage rh
>> --cortex --glmdir
>> rh.ad_hv.area.glmdir
>>
>> mri_glmfit-s
gh --fsgd
>> ad_hv.fsgd dods
>> --C group_diff.mtx --surf fsaverage rh
>> --cortex --glmdir
>> rh.ad_hv.area.glmdir
>>
>> mri_glmfit-sim --glmdir rh.ad_hv
Greve
> <gr...@nmr.mgh.harvard.edu
> <mailto:gr...@nmr.mgh.harvard.edu>
> <mailto:gr...@nmr.mgh.harvard.edu
> <mailto:gr...@nmr.mgh.harvard.edu>>>
>
r.mgh.harvard.edu>>
To: freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
Cc:
Date: Mon, 7 Mar 2016 18:47:11 -0500
Subject: Re: [Freesurfer] group analysis all measures same results
what are your command lines?
On 5 March 2016 at 02:01, Kaiming Yin
all the same.
>
> Thanks,
> Kaiming
>
>
> -- Forwarded message --
> From: Douglas N Greve <gr...@nmr.mgh.harvard.edu>
> To: freesurfer@nmr.mgh.harvard.edu
> Cc:
> Date: Mon, 7 Mar 2016 18:47:11 -0500
> Subject: Re: [Freesurfer] group analysis all
;gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>
To: freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu>
Cc:
Date: Mon, 7 Mar 2016 18:47:11 -0500
Subject: Re: [Freesurfer] group analysis all measures same results
what are your command lines?
On 5 March 2016
edu>
To: freesurfer@nmr.mgh.harvard.edu
Cc:
Date: Mon, 7 Mar 2016 18:47:11 -0500
Subject: Re: [Freesurfer] group analysis all measures same results
what are your command lines?
On 5 March 2016 at 02:01, Kaiming Yin <yinkaiming6...@gmail.com> wrote:
> Dear guys,
>
> I was
Dear Douglas,
Sorry for this, but could I ask how to include the previous correspondence?
I just saw your responses from Freesurfer Digest, Vol 145, Issue 19, and I
don't know how to do that. I use gmail.
Best,
Kaiming
On Tue, Mar 8, 2016 at 10:50 PM, Douglas N Greve
Dear Douglas,
My command lines were, e.g. right thickness and right white surface (using
the same ad_hv.fsgd and group_diff.mtx files in the command lines):
ad_hv.fsgd
GroupDescriptorFile 1
Title AD_HV_GroupAnalysis
Class AD
Class HV
Input AD_003 AD
Input AD_005 AD
...
Input HV_AB HV
Input
what are your command lines?
On 03/04/2016 09:01 PM, Kaiming Yin wrote:
> Dear guys,
>
> I was doing group analysis (command-line) on two groups (patients and
> control, no age or other information). The data has been "qcached",
> and after following the three steps as "mris_preproc, mri_glmfit
Dear guys,
I was doing group analysis (command-line) on two groups (patients and
control, no age or other information). The data has been "qcached", and
after following the three steps as "mris_preproc, mri_glmfit and
mri_glmfit-sim" shown in the tutorial on the Freesurfer website, I obtained
the
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