Yes, I've also downgraded from the 7174 driver to the 6629 driver
because of huge performance problems with another open source density
fitting program. We are using Scientific Linux, another RedHat
Enterprise Clone, as operating system.
Cheers,
Dirk.
Warren DeLano wrote:
Folks,
You may
Hi,
When I try orient command to orient the molecule, the camera changes
but the coodinates don't change.
I wonder whether it is possible that when I orient the molecule the
coodinates also change.
Thanks
Bingding
Thanks!
But translate[x,y,z] only translate the molecule.
What I want is to put longest length of molecule in the X axes, the
second Y axes, the third z axes.
Just like what orient command does which change the view of camera but
not the coordinates.
Now I want the coordinates also change
This is tricky because the view matrix isn't quite the same format as the
coordinates translation matrix. Here's some code that will do what you
want:
# transform selection coordinates by the camera view
cv=list(cmd.get_view())
cmd.transform_selection(all, \
cv[0:3]+[0.0]+ \
cv[3:6]+[0.0]+
I am using Pymol to visualize a pseudo polymer generated by some
brownian dynamics code. We take the coordinate files generated by our
simulation and convert them into a PDB file using the hetatm
representation and having explicit connections defined with conect. For
example:
HETATM1
I recently upgraded to Fedora Core 3 and have been having some strange
problems with PyMOL.
Molecules look fine when rendered as lines, sticks or mesh, but spheres,
surfaces, and sometimes cartoons only appear for half the molecule. See
the following page for examples of this. I've also posted
