Re: [PyMOL] Pymol segmentation fault

2009-09-24 Thread Ian Berke
y, September 24, 2009 11:26 AM > *To:* pymol-users@lists.sourceforge.net > *Subject:* [PyMOL] Pymol segmentation fault > > Hi, > > I'm having an issue trying to run various plugins in pymol (apbs and > autodock). Whenever I select a button that should bring up a file browser

Re: [PyMOL] Pymol segmentation fault

2009-09-24 Thread Pete Meyer
> Does anyone have any thoughts? Two things to try that may or may not help: 1. Check if the problem persists when running pymol in single-threaded mode ("cmd.set('max_threads',1)"). libpthread in the trace might indicate that one of the libraries is having issues with multiple threads. 2. On

Re: [PyMOL] Pymol segmentation fault

2009-09-24 Thread Warren DeLano
] Sent: Thursday, September 24, 2009 11:26 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] Pymol segmentation fault Hi, I'm having an issue trying to run various plugins in pymol (apbs and autodock). Whenever I sel

[PyMOL] Pymol segmentation fault

2009-09-24 Thread Ian Berke
Hi, I'm having an issue trying to run various plugins in pymol (apbs and autodock). Whenever I select a button that should bring up a file browser to choose a file (e.g. "Choose Externally generated pqr" in apbs) Pymol exits with: Segmentation fault (core dumped). Same thing happens when I go to

RE: [PyMOL] PyMol segmentation fault while starting from external python program

2005-10-11 Thread Warren DeLano
Update: With respect to "import pymol", I think all of the reported segmentation fault and race conditions have now been eliminated from the very latest source code. Since everyone doesn't have CVS access, I have posted a source tar-gz file on http://delsci.com/beta with updated instructions on b

RE: [PyMOL] PyMol segmentation fault while starting from external python program

2005-10-11 Thread Warren DeLano
din [mailto:brynd...@msu.edu] > Sent: Tuesday, October 11, 2005 5:06 AM > To: Warren DeLano > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] PyMol segmentation fault while starting > from external python program > > Warren > > It seems like PyMol should have

RE: [PyMOL] PyMol segmentation fault while starting from external python program

2005-10-10 Thread Warren DeLano
ber 10, 2005 2:33 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] PyMol segmentation fault while starting from > external python program > > Launching PyMol form external python script will produce > segmaentation fault. > For example starting "launch.py" fr

[PyMOL] PyMol segmentation fault while starting from external python program

2005-10-10 Thread Dmitriy Igor Bryndin
Launching PyMol form external python script will produce segmaentation fault. For example starting "launch.py" from "/pymol/examples/launching" -- $ python launch.py zsh: segmentation fault python launch.py -

Re: [PyMOL] Pymol segmentation fault - fedora core 1

2004-07-26 Thread Filipe Maia
On Mon, 26 Jul 2004 10:40:47 +0100, Roger Dodd wrote: Hi everyone, I've recently updated to the 0.97 release of pymol and although it ran fine to start with, it's now generating a segmentation fault. I installed from the * pymol-0_97-bin-linux-libc6-i386.tgz*

[PyMOL] Pymol segmentation fault - fedora core 1

2004-07-26 Thread Roger Dodd
Hi everyone, I've recently updated to the 0.97 release of pymol and although it ran fine to start with, it's now generating a segmentation fault. I installed from the * pymol-0_97-bin-linux-libc6-i386.tgz*