MWilson mjw029 at bucknell.edu writes:
Hi All,
I am using canonical correspondence analysis to compare a community
composition matrix to a matrix of sample spatial relationships and
environmental variables. In order to parse out how much variance is
explained purely by space (S/E) or the
Dear R-users,
I'm a bit of a rooky in R and do not know how to change the y-axis intervals of
a boxplot.
The y-axis in my boxplot ranges from 0 to 100 which is fine. The problem is the
interval level in between. Now it increases with steps of 20 but I'd like to
have it changed by steps of 5.
Hello,
?par (particularly the 'yaxt' argument)
?axis ('side' and 'at' arguments)
Hope this help,
Pascal
On 29/03/13 16:37, Berg, Tobias van den wrote:
Dear R-users,
I'm a bit of a rooky in R and do not know how to change the y-axis intervals of
a boxplot.
The y-axis in my boxplot ranges
On Mar 28, 2013, at 22:27 , Thomas Adams wrote:
All,
Well to my relief and embarrassment, I discovered my problem. About 5 weeks
ago, I shutdown my computer and moved it. When I reconnected everything I
apparently plugged my HDMI monitor into the 'wrong' output port without
realizing it.
I have found that the easiest way to read/write Excel files is to use the
XLConnect package.
Sent from my iPad
On Mar 28, 2013, at 15:54, Henry Njovu hnj...@mwekawildlife.org wrote:
To be able to import excel-files into R you also need to download Perl from
http://www.perl.org/. From this
I use XlsReadWrite package, its good.
On Fri, Mar 29, 2013 at 9:00 AM, Jim Holtman jholt...@gmail.com wrote:
I have found that the easiest way to read/write Excel files is to use the
XLConnect package.
Sent from my iPad
On Mar 28, 2013, at 15:54, Henry Njovu hnj...@mwekawildlife.org
Thank you Pascal but unfortunelately i still didn't figure out how to change
the numbers presented at the y-axis.
I looked up your suggestions but if I'm right, yaxt can set if the axis is
presented (yaxt=s) or suppressed (yaxt=n) which does not help for changing
the values on the y-axis.
The
Hello all!
I have a problem with my data in R. When I want to plot the following data,
I have a problem with y scale. The maximum value is cc. 10 degrees and in R
is about 100.
I use this code:
fasy-read.table(gridd1.txt,sep=\t,dec=,,header=T,row.names=1)
# here are the years:
x -
Hi,
Example adapted from ?boxplot
par(las=1, mfrow=c(2,1))
boxplot(count ~ spray, data = InsectSprays, col = lightgray, yaxt='n')
axis(2, at=seq(0,25,2.5))
boxplot(count ~ spray, data = InsectSprays, col = lightgray, yaxt='n')
axis(2, at=seq(0,25,1))
HTH,
Pascal
On 29/03/13 18:22, Berg,
hello all!
I solve the problem!
Sorry for disturbing!
Best regards,
CR
On 29 March 2013 11:28, catalin roibu catalinro...@gmail.com wrote:
Hello all!
I have a problem with my data in R. When I want to plot the following
data, I have a problem with y scale. The maximum value is cc. 10
Hi,
Rather than a graph label to display labels as 0e+00, how do I get it to
display the real value?
Thanks
--
Shane
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
On Fri, Mar 29, 2013 at 10:44 AM, Shane Carey careys...@gmail.com wrote:
Hi,
Rather than a graph label to display labels as 0e+00, how do I get it to
display the real value?
Hi Shane,
Is 0e+00 not a real value? I'd assume it's roughly equal to zero... ;-)
More seriously, could we have a
Thank you Peter, that sounds pretty reasonable.
Best,
Tom
On Friday, March 29, 2013, peter dalgaard wrote:
On Mar 28, 2013, at 22:27 , Thomas Adams wrote:
All,
Well to my relief and embarrassment, I discovered my problem. About 5
weeks
ago, I shutdown my computer and moved it. When
Good one!!! :-) Im plotting a Cumulative Frequency curve, see graph
attached (just using normal basic plot command), but the values come out
4e+05 etc and I dont know how to produce the number without scientific
notation?
Thanks
On Fri, Mar 29, 2013 at 10:58 AM, R. Michael Weylandt
And if you would like to be able to read the crowded axis:
boxplot(count ~ spray, data = InsectSprays, col = lightgray, yaxt='n')
library(plotrix)
staxlab(2, at=seq(0,25,1),cex=0.8)
Jim
On 03/29/2013 08:36 PM, Pascal Oettli wrote:
Hi,
Example adapted from ?boxplot
par(las=1, mfrow=c(2,1))
Hello,
You can use
axis(side=2, at=c(10, 30, 50, 70, 90))
or
axis(side=2, at=seq(10, 90, by = 20))
Hope this helps,
Rui Barradas
Em 29-03-2013 09:22, Berg, Tobias van den escreveu:
Thank you Pascal but unfortunelately i still didn't figure out how to change
the numbers presented at the
Every week, I learn something new with R-help.
Pascal
On 29/03/13 20:23, Jim Lemon wrote:
And if you would like to be able to read the crowded axis:
boxplot(count ~ spray, data = InsectSprays, col = lightgray, yaxt='n')
library(plotrix)
staxlab(2, at=seq(0,25,1),cex=0.8)
Jim
On 03/29/2013
Thank you all,
Guess you'll learn everyday new stuff, especially in R.
Tobias
-Oorspronkelijk bericht-
Van: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] Namens
Pascal Oettli
Verzonden: vrijdag 29 maart 2013 12:33
CC: 'r-help@r-project.org'
Onderwerp: Re: [R]
Does this help?
http://stackoverflow.com/questions/5963047/do-not-want-scientific-notation-on-plot-axis
John Kane
Kingston ON Canada
-Original Message-
From: careys...@gmail.com
Sent: Fri, 29 Mar 2013 10:44:16 +
To: r-help@r-project.org
Subject: [R] 0e+00
Hi,
Rather than
yes I was also having something like this happen to me just before everything
blew up. i never set a working directory, but use file.choose() or call the
path directly. but the last few hours before it failed, it kept running older
datasets, when i clearly called the new data set, for
Thank you so much for your response! This clarifies the issue I was having.
Cheers,
Matt
On Fri, Mar 29, 2013 at 2:43 AM, Jari Oksanen [via R]
ml-node+s789695n4662809...@n4.nabble.com wrote:
MWilson mjw029 at bucknell.edu writes:
Hi All,
I am using canonical correspondence analysis to
Yup, that worked, cheers for that John
On Fri, Mar 29, 2013 at 12:09 PM, John Kane jrkrid...@inbox.com wrote:
Does this help?
http://stackoverflow.com/questions/5963047/do-not-want-scientific-notation-on-plot-axis
John Kane
Kingston ON Canada
-Original Message-
From:
This can also be done without the axis() function:
par(las=1, mfrow=c(2,1))
boxplot(count ~ spray, data = InsectSprays, yaxp=c(0, 25, 10),
cex.axis=0.6,
col = lightgray)
boxplot(count ~ spray, data = InsectSprays, yaxp=c(0, 25, 25),
cex.axis=0.6,
col = lightgray)
I added a new data file, NLSY.RData, to a package that uses LazyData: Yes
It passed R CRAN check and R CMD install worked w/o significant complaints.
* installing to library 'C:/R/R-2.15.2/library'
* installing *source* package 'heplots' ...
** R
** data
** moving datasets to lazyload DB
**
Hello David,
Thank you for letting me know that the partimat() function calls that function.
I am kind of knew to R so I do not know exactly how to describe the structure.
If I understand correctly, what I essentially need to do is pass in all the
different data sets into one partimat()
On 29.03.2013 15:59, Antelmo Aguilar wrote:
Hello David,
Thank you for letting me know that the partimat() function calls that function.
I am kind of knew to R so I do not know exactly how to describe the structure.
If I understand correctly, what I essentially need to do is pass in all
Hi R help forum,
I have a simple data frame of four columns - one of numbers (really a
categorical variable), one of dates and one
of data. I have over 500,000 data points to work with, spread over 40
files, each named after a different animal.
These are contact data recorded by proximity
Dear R users,I proceeded to a regression through the gls fonction (package
nlme) with the following code:
a1=read.table(total25.txt,header=TRUE)a1$T=factor(a1$T)m2=gls(Res~ModeF*T,a1)m2summary(m2)
I used gls fonction because it deals with heteroskedasticity and I would like
you to confirm that I
Hi,
Check these links:
http://r.789695.n4.nabble.com/Change-font-size-in-Windows-td3518034.html
http://r.789695.n4.nabble.com/GUI-font-size-td798626.html
A.K.
From: Joanna Zhang zjoanna2...@gmail.com
Sent: Friday, March 29, 2013 10:01 AM
Subject: change font
Hi all,
I'm having trouble with the model generating 'dredge' function in the MuMIn
'Multi-model Inference' package.
Here's the script:
globalmodel- glm(TB~lat+protocol+tested+
streams+goats+hay+cattle+deer,
family=binomial)
chat- deviance(globalmodel)/59 #There we 59 residual degrees of
Whether can any R package run Full modified OLS (Phillips and Hansen 1990 ),
DOLS (Stock and Watson 1993) and ADL model (Pesaran and Shin 2001) for
cointegrated VAR model?
I cannot find any useful order in VAR and SVAR package.
Thanks.
Eric Wang
[[alternative HTML version deleted]]
I was thinking of splitting the y-axis into two? Is this possible?
Thanks
--
Shane
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
On Fri, 29 Mar 2013, Shane Carey wrote:
I was thinking of splitting the y-axis into two? Is this possible?
Shane,
Does a boxplot show what you want to display? If not, what information do
you wish to convey about these data?
Rich
__
On 29.03.2013 15:24, Michael Friendly wrote:
I added a new data file, NLSY.RData, to a package that uses LazyData: Yes
It passed R CRAN check and R CMD install worked w/o significant complaints.
* installing to library 'C:/R/R-2.15.2/library'
* installing *source* package 'heplots' ...
** R
On Fri, 29 Mar 2013, Shane Carey wrote:
Need to try show it as a bar chart or similar,
Will a ln(y) transformation meet your needs?
Rich
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting
On 3/29/2013 10:52 AM, Shane Carey wrote:
I was thinking of splitting the y-axis into two? Is this possible?
Thanks
Look at the plotrix package and see:
https://stat.ethz.ch/pipermail/r-help/2011-September/290685.html
--
Robert W. Baer, Ph.D.
Professor of Physiology
Kirksille College of
On 29/03/2013 14:24, Michael Friendly wrote:
I added a new data file, NLSY.RData, to a package that uses LazyData: Yes
It passed R CRAN check and R CMD install worked w/o significant complaints.
* installing to library 'C:/R/R-2.15.2/library'
* installing *source* package 'heplots' ...
** R
**
On Mar 29, 2013, at 17:22 , Prof Brian Ripley wrote:
On 29/03/2013 14:24, Michael Friendly wrote:
I added a new data file, NLSY.RData, to a package that uses LazyData: Yes
It passed R CRAN check and R CMD install worked w/o significant complaints.
* installing to library
I am trying to write a function that makes a matrix out of two lists. As you
will see run running the function below, the result is NOT a matrix but rather
a list. Can anyone tell me what I am doing wrong?
Thanks,
John
test - function(one,two) {
cat(List One=,one,\n)
cat(List Two=,two,\n)
Hi,
final-data.frame()
for (m1 in 4:10) {
for (n1 in 4:10){
for (x1 in 0: m1) {
for (y1 in 0: n1) {
final- rbind(final,c(m1,n1,x1,y1))
res
final1-within(final,{flag-ifelse(x1/m1y1/n1, 1,0)})
head(final1)
# m1 n1 x1 y1 flag
#1 4 4 0 0 0
#2 4 4
Forgot:
colnames(final)- c(m1,n1,x1,y1)
before;
final1-within(final,{flag-ifelse(x1/m1y1/n1, 1,0)})
- Original Message -
From: arun smartpink...@yahoo.com
To: Joanna Zhang zjoanna2...@gmail.com
Cc: R help r-help@r-project.org
Sent: Friday, March 29, 2013 1:47 PM
Subject: Re: if clause
Hi,
On Mar 29, 2013, at 1:29 PM, John Sorkin wrote:
I am trying to write a function that makes a matrix out of two lists. As you
will see run running the function below, the result is NOT a matrix but
rather a list. Can anyone tell me what I am doing wrong?
Thanks,
John
test -
On 3/29/2013 12:05 PM, Uwe Ligges wrote:
What could cause this?
No idea. Can you make the package source (incl that Rdata file)
available?
It must have been something in my old session. Starting a fresh one, it
went away.
--
Michael Friendly Email: friendly AT yorku DOT ca
Ben,
Thank you. When I used print I saw the matrix; the problem was as you indicated
that I was using cat.
Thanks,
John
John David Sorkin M.D., Ph.D.
Chief, Biostatistics and Informatics
University of Maryland School of Medicine Division of Gerontology
Baltimore VA Medical Center
10 North
Hi,
Please what am I doing wrong? I tried installing some views (eg
MachineLearning, Multivariate) on R2.15.3, but it keeps on telling me that the
package is not available for 2.15.3. Is it true?
Thanks
[[alternative HTML version deleted]]
Whether can any R package run Full modified OLS (Phillips and Hansen 1990 ),
DOLS (Stock and Watson 1993) and ADL model (Pesaran and Shin 2001) for
cointegrated VAR model?
I cannot find any useful order in VAR and SVAR package.
Thanks.
Eric Wang
[[alternative HTML version deleted]]
On Mar 29, 2013, at 10:40 AM, ugulum...@yahoo.com wrote:
Hi,
Please what am I doing wrong? I tried installing some views (eg
MachineLearning, Multivariate) on R2.15.3, but it keeps on telling me that
the package is not available for 2.15.3. Is it true?
You cannot install TaskViews.
With a data frame containing some X Y variables I can get the between
set correlations
with cor(X,Y):
cor(NLSY[,1:2], NLSY[3:6])
antisochyperact income educ
math 0.043381307 -0.07581733 0.25487753 0.2876875
read -0.003735785 -0.07555683 0.09114299 0.1884101
Is there
On 29.03.2013 19:07, David Winsemius wrote:
On Mar 29, 2013, at 10:40 AM, ugulum...@yahoo.com wrote:
Hi,
Please what am I doing wrong? I tried installing some views (eg
MachineLearning, Multivariate) on R2.15.3, but it keeps on telling me that the
package is not available for 2.15.3. Is
The plotrix package provides a way to insert a break into a y-axis but doing so
is not considered really good plotting behaviour. The split axis method
actually shows the data but human perception has a hard time handling the split.
I'd look at some kind of transformation as a possibility or
On Fri, 29 Mar 2013, Uwe Ligges wrote:
On 29.03.2013 19:07, David Winsemius wrote:
On Mar 29, 2013, at 10:40 AM, ugulum...@yahoo.com wrote:
Hi,
Please what am I doing wrong? I tried installing some views (eg
MachineLearning, Multivariate) on R2.15.3, but it keeps on telling me that
the
There is the pairs2 function in the TeachingDemos package that works like
cor(x,y) where you give it 2 matricies/data frames and it gives the
pairwise plots between the 2 groups. There is currently not a formula
interface.
On Fri, Mar 29, 2013 at 12:16 PM, Michael Friendly
I must be blind but I don' see any link between the two files. RD2 seems to
give some kind of encounter data in length of time. allocate gives the time
that an animal was wearing a collar ?
If each file belongs to a specific animal (am I reading this correctly) what
does it matter what the
On Mar 29, 2013, at 11:19 AM, Uwe Ligges wrote:
On 29.03.2013 19:07, David Winsemius wrote:
On Mar 29, 2013, at 10:40 AM, ugulum...@yahoo.com wrote:
Hi,
Please what am I doing wrong? I tried installing some views (eg
MachineLearning, Multivariate) on R2.15.3, but it keeps on
On Mar 29, 2013, at 10:47 AM, arun wrote:
Hi,
final-data.frame()
for (m1 in 4:10) {
for (n1 in 4:10){
for (x1 in 0: m1) {
for (y1 in 0: n1) {
final- rbind(final,c(m1,n1,x1,y1))
res
final1-within(final,{flag-ifelse(x1/m1y1/n1, 1,0)})
That
Yes, that is better.
I just copied the same function that the OP used.
A.K.
From: David Winsemius dwinsem...@comcast.net
To: arun smartpink...@yahoo.com
Cc: Joanna Zhang zjoanna2...@gmail.com; R help r-help@r-project.org
Sent: Friday, March 29, 2013 4:46
On Mar 29, 2013, at 1:48 PM, arun wrote:
Yes, that is better.
I just copied the same function that the OP used.
A.K.
From: David Winsemius dwinsem...@comcast.net
To: arun smartpink...@yahoo.com
Cc: Joanna Zhang zjoanna2...@gmail.com; R help
HI Irucka,
Please check this:
temp- structure(list(`:Bostoncitydata` = structure(list(Month = c(1L,
2L, 3L, NA), Data1 = c(1.5, 12.3, 11.4, NA), Data2 = c(9.1342,
12.31, 3.5, NA)), .Names = c(Month, Data1, Data2), class = data.frame,
row.names = c(NA,
-4L)), `:Chicagocitydata` =
Hi Arun, thank you very much. That code worked perfectly.
Below is the full version of the code with the addition of a legend.
Irucka
rm(list=ls())
source(read.funkyfile.R)
temp = read.funkyfile(seasonalFluxComparisonDataSet.csv, station_id,
header=TRUE, sep=\t)
temp1-lapply(temp,function(x)
'rank' should be QAICc.
AICc does not have argument 'chat', hence the error.
kamil
CatCowie wrote
Hi all,
I'm having trouble with the model generating 'dredge' function in the
MuMIn
'Multi-model Inference' package.
Here's the script:
globalmodel- glm(TB~lat+protocol+tested+
Anyone for that question?
2013/3/28 Pierre Antoine DuBoDeNa pad...@gmail.com
Hello,
I want to use pearson's correlation as distance between observations and
then use any centroid based linkage distance (ex. Ward's distance)
When linkage distances are formed as the Lance-Williams
HI,
I am not sure I understand it correctly.
Should this (m1*x1/m1) +n1*y1/n1) /(m1+n1) be (x1+y1)/(m1+n1)?
final-data.frame()
for (m1 in 4:10) {
for (n1 in 4:10){
for (x1 in 0: m1) {
for (y1 in 0: n1) {
final- rbind(final,c(m1,n1,x1,y1))
I am not sure about your question but i did find this:
http://research.med.helsinki.fi/corefacilities/proteinchem/hierarchical_clustering_basics.pdf
it seems to address all three topics so perhaps the answer is in there??
On Mar 28, 2013, at 6:16 PM, Pierre Antoine DuBoDeNa wrote:
Hello,
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