[ECOLOG-L] Initiate a new habit in transparent, rigorous science

2016-11-09 Thread David Mellor
Hello Ecologgers!

In a time when there is increasing concern about the rigor of published
research from both academic and public sectors, we owe it to our
communities to take every reasonable step to increase the transparency and
replicability of our research.

Preregistration specifies in advance how a study will be conducted and its
data analyzed in a time stamped, read-only format. Preregistration
clarifies the easy-to-blur distinction between confirmatory (hypothesis
testing) research and exploratory (hypothesis generating) research. Both
processes are crucial for science to advance: exploratory research finds
the unexpected, and confirmatory research places the highest standard of
rigor on the inferences. Unintentionally presenting exploratory research as
confirmatory (by, for example, tweaking analyses as data come in) removes
the inferential value of most common statistical tests.

We want to initiate preregistration as a habit before every data collection
effort, to simply add clarity to what (if any) a-priori hypotheses existed
before seeing the data. Toward that end, the Preregistration Challenge (
https://cos.io/prereg) is a competition to reward 1,000 researchers with
$1,000 prizes for publishing the results of preregistered work. Please
consider starting your preregistration today for your next project, and
please contact me with questions or comments.

Studies must be published in journals that are taking concrete steps toward
reducing the replication crisis. Currently, that list includes 700 journals
(see the 20 ecology journals below). If you're a journal editor and want to
see your journal on that list, please see here (https://cos.io/getlisted/)
or contact me.

Sincerely,
David Mellor

David Mellor, PhD <https://osf.io/qthsf/>
Project Manager, Journal and Funder Initiatives <https://cos.io/top>
Center for Open Science <https://cos.io/>
(434) 352-1066, @EvoMellor <https://twitter.com/@EvoMellor>, Skype:
evomellor
Are you ready to take the Prereg Challenge <https://cos.io/prereg>?

American Journal of Botany
Applications in Plant Sciences
Biotropica
Collabra
Conservation Biology
Ecology and Evolution
Ecology Letters
Evolution
Journal of Evolutionary Biology
Movement Ecology
Nature
Nature Ecology & Evolution
Oikos
Systematic Botany
The Auk: Ornithological Advances
BMC Ecology
PLoS ONE
PLoS Biology
PLoS Computational Biology
PLoS Medicine


Re: [ECOLOG-L] promoting Ecology course

2016-02-01 Thread David Mellor
Hello Kay,

My first job out of grad school (ecology and evolution) was advising
biology majors at a large public university. The vast majority were pre-med
or otherwise health focused. They had a requirement to take at least one
ecology course, and for those that were focused on health careers, this was
often their only ecology course. However, several of the ecology courses
did have a health-related course title (parasites, medicine, disease,
physiology, etc) and were often extremely popular among bio majors (some
would say too popular given the ratio of seats to students in many public
universities). This could suggest either a slight refocus of an existing
course, or perhaps a new ecology course that could very easily teach many
core ecology concepts with health related examples. I think many people on
this list serv would agree that knowledge of some core concepts in ecology
and evolution would be very useful among healthcare professionals, so I
think this is a reasonable action to consider. Good luck!

Best,
David

David Mellor <https://osf.io/qthsf/>
Center for Open Science <http://centerforopenscience.org/>
@EvoMellor <https://twitter.com/EvoMellor>


On Mon, Feb 1, 2016 at 11:23 AM, Kay Shenoy <kay.yellowt...@gmail.com>
wrote:

> Does anybody have ideas on how to promote Ecology among Biology
> undergraduates? We are finding that Biology majors are increasingly
> focused on health-care fields; many students consider Ecology
> “unimportant” for their future careers, and it is not addressed in the
> MCAT exams, so they give it a low priority. How does one increase
> enrollment in Ecology courses, and particularly in schools that do not
> have dedicated Ecology departments? Any thoughts would be welcome!
>


Re: [ECOLOG-L] fabricated reviews lead to retractions of papers

2015-03-27 Thread David Mellor
It is. I don't know the history of how or why that practice came about, or
how guilty Biomed Central was of it relative to other publishers. I
expect that as workloads for editors increased, it was requested by editors
as a way for them to more easily find reviewers. I think this peer-reviewer
fraud ring (
http://www.nytimes.com/2014/07/11/science/science-journal-pulls-60-papers-in-peer-review-fraud.html)
also rigged the system based on fake reviewers. Biomed Central is barring
the use of such suggested reviewers from their automated submission
process, but there is nothing preventing an author from continuing to
suggest a reviewer in a cover letter to the editor.

On Fri, Mar 27, 2015 at 4:44 PM, Martin Meiss mme...@gmail.com wrote:

 I thought that editors of scholarly journals only used reviewers that they
 know by reputation.  The suggested reviewer feature sounds like picking a
 name out of a hat.

 2015-03-27 15:51 GMT-04:00 David Mellor mellor.da...@gmail.com:

 It appears to be an issue with fraudulent “translation services” that pose
 on behalf of the foreign language researcher and use the “suggested
 reviewer” feature in the submission process to mislead editors into
 contacting reviewers who aren’t who they claim to be. The BMC blog post
 http://blogs.biomedcentral.com/bmcblog/2015/03/26/
 manipulation-peer-review/ explains the fraud. My insight is that this
 could be happening elsewhere, and that BMC is doing the right thing to
 bring it to light, given the potential tarnish it creates.

 David Mellor
 Center for Open Science http://centerforopenscience.org
 (434) 352-1066 @EvoMellor

 On Mar 27, 2015, at 2:29 PM, Martin Meiss mme...@gmail.com wrote:

 I wonder if part of the problem is that one publisher, BioMed Central,
 http://www.biomedcentral.com/about puts out 277 journals.  That seems
 like a lot of concentration of power.

 Martin M. Meiss

 2015-03-27 12:46 GMT-04:00 David Inouye ino...@umd.edu:

 I hope this hasn't been an issue in ecology.

 http://www.washingtonpost.com/news/morning-mix/wp/2015/03/
 27/fabricated-peer-reviews-prompt-scientific-journal-to-
 retract-43-papers-systematic-scheme-may-affect-other-journals/






Re: [ECOLOG-L] fabricated reviews lead to retractions of papers

2015-03-27 Thread David Mellor
It appears to be an issue with fraudulent “translation services” that pose on 
behalf of the foreign language researcher and use the “suggested reviewer” 
feature in the submission process to mislead editors into contacting reviewers 
who aren’t who they claim to be. The BMC blog post 
http://blogs.biomedcentral.com/bmcblog/2015/03/26/manipulation-peer-review/ 
http://blogs.biomedcentral.com/bmcblog/2015/03/26/manipulation-peer-review/ 
explains the fraud. My insight is that this could be happening elsewhere, and 
that BMC is doing the right thing to bring it to light, given the potential 
tarnish it creates.

David Mellor
Center for Open Science http://centerforopenscience.org/
(434) 352-1066 @EvoMellor

 On Mar 27, 2015, at 2:29 PM, Martin Meiss mme...@gmail.com wrote:
 
 I wonder if part of the problem is that one publisher, BioMed Central,
 http://www.biomedcentral.com/about puts out 277 journals.  That seems
 like a lot of concentration of power.
 
 Martin M. Meiss
 
 2015-03-27 12:46 GMT-04:00 David Inouye ino...@umd.edu:
 
 I hope this hasn't been an issue in ecology.
 
 http://www.washingtonpost.com/news/morning-mix/wp/2015/03/
 27/fabricated-peer-reviews-prompt-scientific-journal-to-
 retract-43-papers-systematic-scheme-may-affect-other-journals/