Re: [Freesurfer] Freesurfer V6 beta

[Francis Tyson Thomas]

Hi Bruce,

Is there any new timeline regarding the release of the v6 beta? Because I'm
currently waiting on that version for my project's work because of the new
hipppocampal module and knowing that will help me a lot.

Thanks,
Tyson

On Tue, May 3, 2016 at 5:51 AM, Bruce Fischl 
wrote:

> Hi Tyson
>
> we are moving through our testing and hoping to get it out soon. Hard to
> say more definitively than that
>
> sorry
> Bruce
>
>
> On Mon, 2 May 2016, Francis Tyson Thomas wrote:
>
> > Hello Fresurfer admin!
> > I was looking for the v6 beta and it looks like it still hasn't been
> > released after it was pulled down the last time. I would like to know
> what
> > is the expected ETA for the beta. Last I remember it was mentioned it was
> > on the verge of release about two weeks ago.I'm looking forward to get my
> > hands on the beta!
> >
> > Thanks,
> > Tyson
> >
> >
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Re: [Freesurfer] Freesurfer V6 beta

[Bruce Fischl]

Hi Tyson

we are moving through our testing and hoping to get it out soon. Hard to
say more definitively than that

sorry
Bruce


On Mon, 2 May 2016, Francis Tyson Thomas wrote:

> Hello Fresurfer admin!
> I was looking for the v6 beta and it looks like it still hasn't been
> released after it was pulled down the last time. I would like to know what
> is the expected ETA for the beta. Last I remember it was mentioned it was
> on the verge of release about two weeks ago.I'm looking forward to get my
> hands on the beta!
> 
> Thanks,
> Tyson
> 
>
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[Freesurfer] Freesurfer V6 beta

[Francis Tyson Thomas]

Hello Fresurfer admin!

I was looking for the v6 beta and it looks like it still hasn't been
released after it was pulled down the last time. I would like to know what
is the expected ETA for the beta. Last I remember it was mentioned it was
on the verge of release about two weeks ago.I'm looking forward to get my
hands on the beta!

Thanks,
Tyson
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Re: [Freesurfer] Freesurfer v6 beta

[Eugenio Iglesias]

Hi again, 
in the paper, we used FreeSurfer 5.3 the process the data (recon-all), and then 
run the hippocampal module on top of that. So, with a bit of trouble, you can 
reproduce the results.. 
However, the 6.0 beta was taken down, so reproducing the results of the 
recon-all stream would be hard, and since such results affect the hippocampal 
module, reproducing the subfield segmentation would in turn also be hard. 
Does this make sense? 
Cheers, 
/E 

Juan Eugenio Iglesias 
Postdoctoral researcher BCBL 
www.jeiglesias.com 
www.bcbl.eu 

Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer 


From: "Francis Tyson Thomas" <francisttho...@email.arizona.edu> 
To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> 
Sent: Thursday, April 14, 2016 1:04:31 AM 
Subject: Re: [Freesurfer] Freesurfer v6 beta 

Hi Eugenio, 
I understood this part that you mentioned but I didn't understand how is is 
affected and what would be its consequences? Because I am referring to your 
preprint paper that makes use of v6, so will the results/validity of that paper 
also get affected by these differences. Because in my work the accuracy of the 
segmentation outputs are critical both for analysis and speeding it up. 

Thanks, 
Tyson 

On Wed, Apr 13, 2016 at 3:52 PM, Eugenio Iglesias < e.igles...@bcbl.eu > wrote: 



Hi Tyson, 
the hippocampal module shouldn't change between your beta and the FS6 release, 
but the main recon-all stream will. Since the latter is used to initialize the 
former, the results will be a bit different. 
Cheers, 
/Eugenio 

Juan Eugenio Iglesias 
Postdoctoral researcher BCBL 
www.jeiglesias.com 
www.bcbl.eu 

Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer 


From: "Francis Tyson Thomas" < francisttho...@email.arizona.edu > 
To: "Freesurfer support list" < freesurfer@nmr.mgh.harvard.edu > 
Sent: Wednesday, April 13, 2016 8:19:18 PM 
Subject: [Freesurfer] Freesurfer v6 beta 

Hi, 

I was wondering when would the new Freesurfer v6 beta be available? Also I have 
been using the old beta for my hippocampal segmentation and I wanted to know if 
this new beta will affect the results of that? 

Thanks, 
Tyson 

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Re: [Freesurfer] Freesurfer v6 beta

[Francis Tyson Thomas]

Hi Eugenio,

I understood this part that you mentioned but I didn't understand how is is
affected and what would be its consequences? Because I am referring to your
preprint paper that makes use of v6, so will the results/validity of that
paper also get affected by these differences. Because in my work the
accuracy of the segmentation outputs are critical both for analysis and
speeding it up.

Thanks,
Tyson

On Wed, Apr 13, 2016 at 3:52 PM, Eugenio Iglesias <e.igles...@bcbl.eu>
wrote:

> Hi Tyson,
> the hippocampal module shouldn't change between your beta and the FS6
> release, but the main recon-all stream will. Since the latter is used to
> initialize the former, the results will be a bit different.
> Cheers,
> /Eugenio
>
> Juan Eugenio Iglesias
> Postdoctoral researcher BCBL
> www.jeiglesias.com
> www.bcbl.eu
>
> Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer
>
> --
> *From: *"Francis Tyson Thomas" <francisttho...@email.arizona.edu>
> *To: *"Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
> *Sent: *Wednesday, April 13, 2016 8:19:18 PM
> *Subject: *[Freesurfer] Freesurfer v6 beta
>
> Hi,
>
> I was wondering when would the new Freesurfer v6 beta be available? Also I
> have been using the old beta for my hippocampal segmentation and I wanted
> to know if this new beta will affect the results of that?
>
> Thanks,
> Tyson
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
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> properly
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>
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>
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Re: [Freesurfer] Freesurfer v6 beta

[Eugenio Iglesias]

Hi Tyson, 
the hippocampal module shouldn't change between your beta and the FS6 release, 
but the main recon-all stream will. Since the latter is used to initialize the 
former, the results will be a bit different. 
Cheers, 
/Eugenio 

Juan Eugenio Iglesias 
Postdoctoral researcher BCBL 
www.jeiglesias.com 
www.bcbl.eu 

Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer 


From: "Francis Tyson Thomas" <francisttho...@email.arizona.edu> 
To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> 
Sent: Wednesday, April 13, 2016 8:19:18 PM 
Subject: [Freesurfer] Freesurfer v6 beta 

Hi, 

I was wondering when would the new Freesurfer v6 beta be available? Also I have 
been using the old beta for my hippocampal segmentation and I wanted to know if 
this new beta will affect the results of that? 

Thanks, 
Tyson 

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[Freesurfer] Freesurfer v6 beta

[Francis Tyson Thomas]

Hi,

I was wondering when would the new Freesurfer v6 beta be available? Also I
have been using the old beta for my hippocampal segmentation and I wanted
to know if this new beta will affect the results of that?

Thanks,
Tyson
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Re: [Freesurfer] Freesurfer v6 beta

[Z K]

Indeed the v6.0 beta was removed,,, not because of a "major" bug but 
rather it was just decided that significant development was still needed 
before a true beta could be released.

We continue to make improvements and will be releasing a v6 beta soon, 
but at this point if you want the latest version of freesurfer you will 
need to download the dev (nightly build) version.

-Zeke

On 03/11/2016 07:22 PM, Francis Tyson Thomas wrote:
> Hi folks,
>
> I was just wondering if there was any major bug in the freesurfer v6
> beta that necessitated the removal of the beta from your servers because
> I cannot find them anymore. Does that mean I will have to go with the
> dev version at this point which are like the nightlies of the freesurfer
> v6 updated every few days.
>
> Thanks,
> Tyson
>
>
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[Freesurfer] Freesurfer v6 beta

[Francis Tyson Thomas]

Hi folks,

I was just wondering if there was any major bug in the freesurfer v6 beta
that necessitated the removal of the beta from your servers because I
cannot find them anymore. Does that mean I will have to go with the dev
version at this point which are like the nightlies of the freesurfer v6
updated every few days.

Thanks,
Tyson
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[Freesurfer] Freesurfer V6 (beta) and MacOS 10.11 (El Capitan)

[Kevin Aquino]

Dear all,

I was wondering if many users have had freesurfer 6 (beta) working (well)
with Mac OS 10.11?

(or Freesurfer V5.3)

Thanks!


*Dr Kevin Aquino*
Research fellow,
Sir Peter Mansfield Magnetic Resonance Center, The University of
Nottingham.

Honorary Research Fellow
School of Physics, Faculty of Science, University of Sydney

*E* kevin.aqu...@nottingham.ac.uk, aqu...@physics.usyd.edu.au | *W*
www.physics.usyd.edu.au/~aquino/

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-
Robert Frost

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