Re: [HCP-Users] -cifti-separate

[Marta Moreno]

Thank you I appreciate your help!

All the best,
___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons




On Jan 12, 2015, at 11:19 PM, "Glasser, Matthew"  
wrote:

> Use 
> ${StudyFolder}/${Subject}/MNINonLinear/fsaverage_LR32k/${Subject}.${Hemisphere}.midthickness.32k_fs_LR.surf.gii
> 
> Peace,
> 
> Matt.
> 
> From: Marta Moreno 
> Date: Monday, January 12, 2015 at 10:15 PM
> To: Matt Glasser 
> Cc: "hcp-users@humanconnectome.org" 
> Subject: Re: [HCP-Users] -cifti-separate
> 
> Is data created by the HCP pipeline.
> I made a t-map and saved it as a cifti file with 91K brain ordinates and I 
> would like to cluster extent thresholding using the -cifti-fiind-clusters 
> command but I am not sure what to use as the surface inputs files.
> 
> Thanks,
> ___
> Marta Moreno-Ortega, Ph.D.
> Postdoctoral Research Fellow
> Division of Experimental Therapeutics
> New York State Psychiatric Institute
> Department of Psychiatry
> Columbia University College of Physicians and Surgeons
> 
> 
> 
> 
> On Jan 12, 2015, at 11:09 PM, "Glasser, Matthew"  
> wrote:
> 
>> Is this HCP data or your own data?
>> 
>> Matt.
>> 
>> From: Marta Moreno 
>> Date: Monday, January 12, 2015 at 10:06 PM
>> To: Matt Glasser 
>> Cc: "hcp-users@humanconnectome.org" 
>> Subject: Re: [HCP-Users] -cifti-separate
>> 
>> What is the required surface input for -cifti-find-clusters?
>> 
>> Thanks,
>> ___
>> Marta Moreno-Ortega, Ph.D.
>> Postdoctoral Research Fellow
>> Division of Experimental Therapeutics
>> New York State Psychiatric Institute
>> Department of Psychiatry
>> Columbia University College of Physicians and Surgeons
>> 
>> 
>> 
>> 
>> On Jan 12, 2015, at 11:01 PM, "Glasser, Matthew"  
>> wrote:
>> 
>>> I didn’t read your question closely enough.  You cannot make a surface from 
>>> -cifti-separate (you can make data that you can display and analyze on a 
>>> surface however).
>>> 
>>> Peace,
>>> 
>>> Matt.
>>> 
>>> From: Marta Moreno 
>>> Date: Monday, January 12, 2015 at 9:59 PM
>>> To: Matt Glasser 
>>> Cc: "hcp-users@humanconnectome.org" 
>>> Subject: Re: [HCP-Users] -cifti-separate
>>> 
>>> wb_command  COLUMN -metric CORTEX_RIGHT 
>>> 
>>> Thanks,
>>> ___
>>> Marta Moreno-Ortega, Ph.D.
>>> Postdoctoral Research Fellow
>>> Division of Experimental Therapeutics
>>> New York State Psychiatric Institute
>>> Department of Psychiatry
>>> Columbia University College of Physicians and Surgeons
>>> 
>>> 
>>> 
>>> 
>>> On Jan 12, 2015, at 10:54 PM, "Glasser, Matthew"  
>>> wrote:
>>> 
 Please post your wb_command -cifti-separate command line.
 
 Peace,
 
 Matt.
 
 From: Marta Moreno 
 Date: Monday, January 12, 2015 at 9:52 PM
 To: "hcp-users@humanconnectome.org" 
 Subject: [HCP-Users] -cifti-separate
 
 Hi users,
 
 I am using the -cifti-separate command to generate a surface (i.e. CORTEX 
 RIGHT) to use as right surface input to the -cifti-find-clusters command.
 The output from cifti-separate is not recognized. How do I convert it to a 
 format that will work with cifti-find-clusters? I tried -metric-convert 
 but to no avail. 
 
 Thank you,
 
 ___
 Marta Moreno-Ortega, Ph.D.
 Postdoctoral Research Fellow
 Division of Experimental Therapeutics
 New York State Psychiatric Institute
 Department of Psychiatry
 Columbia University College of Physicians and Surgeons
 
 
 
 
 ___
 HCP-Users mailing list
 HCP-Users@humanconnectome.org
 http://lists.humanconnectome.org/mailman/listinfo/hcp-users
 
  
 The materials in this message are private and may contain Protected 
 Healthcare Information or other information of a sensitive nature. If you 
 are not the intended recipient, be advised that any unauthorized use, 
 disclosure, copying or the taking of any action in reliance on the 
 contents of this information is strictly prohibited. If you have received 
 this email in error, please immediately notify the sender via telephone or 
 return mail.
>>> 
>>> 
>>>  
>>> The materials in this message are private and may contain Protected 
>>> Healthcare Information or other information of a sensitive nature. If you 
>>> are not the intended recipient, be advised that any unauthorized use, 
>>> disclosure, copying or the taking of any action in reliance on the contents 
>>> of this information is strictly prohibited. If you have received this email 
>>> in error, please immediately notify the sender via telephone or return mail.
>> 
>> 
>>  
>> The materials in this message are private and may contain Protected 
>> Healthcare Information or other information of a sensitive nature. If you 
>> are not the intended reci

Re: [HCP-Users] -cifti-separate

[Glasser, Matthew]

Use ${StudyFolder}/${Subject}/MNINonLinear/fsaverage_LR32k/${Subject}.${Hemisphere}.midthickness.32k_fs_LR.surf.gii


Peace,


Matt.




From: Marta Moreno 
Date: Monday, January 12, 2015 at 10:15 PM
To: Matt Glasser 
Cc: "hcp-users@humanconnectome.org" 
Subject: Re: [HCP-Users] -cifti-separate





Is data created by the HCP pipeline.
I made a t-map and saved it as a cifti file with 91K brain ordinates and I would like to cluster extent thresholding using the -cifti-fiind-clusters command but I am not sure what to use as the surface inputs files.


Thanks,



___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons








On Jan 12, 2015, at 11:09 PM, "Glasser, Matthew"  wrote:



Is this HCP data or your own data?


Matt.




From: Marta Moreno 
Date: Monday, January 12, 2015 at 10:06 PM
To: Matt Glasser 
Cc: "hcp-users@humanconnectome.org" 
Subject: Re: [HCP-Users] -cifti-separate





What is the required surface input for -cifti-find-clusters?


Thanks,




___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons








On Jan 12, 2015, at 11:01 PM, "Glasser, Matthew"  wrote:



I didn’t read your question closely enough.  You cannot make a surface from -cifti-separate (you can make data that you can display and analyze on a surface however).


Peace,


Matt.




From: Marta Moreno 
Date: Monday, January 12, 2015 at 9:59 PM
To: Matt Glasser 
Cc: "hcp-users@humanconnectome.org" 
Subject: Re: [HCP-Users] -cifti-separate





wb_command  COLUMN -metric CORTEX_RIGHT 


Thanks,



___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons








On Jan 12, 2015, at 10:54 PM, "Glasser, Matthew"  wrote:



Please post your wb_command -cifti-separate command line.


Peace,


Matt.




From: Marta Moreno 
Date: Monday, January 12, 2015 at 9:52 PM
To: "hcp-users@humanconnectome.org" 
Subject: [HCP-Users] -cifti-separate





Hi users,


I am using the -cifti-separate command to generate a surface (i.e. CORTEX RIGHT) to use as right surface input to the -cifti-find-clusters command.
The output from cifti-separate is not recognized. How do I convert it to a format that will work with cifti-find-clusters? I tried -metric-convert but to no avail. 


Thank you,




___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons










___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users






 



The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended
 recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone
 or return mail.











 



The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended
 recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone
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The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended
 recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone
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The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive 

Re: [HCP-Users] -cifti-separate

[Marta Moreno]

Is data created by the HCP pipeline.
I made a t-map and saved it as a cifti file with 91K brain ordinates and I 
would like to cluster extent thresholding using the -cifti-fiind-clusters 
command but I am not sure what to use as the surface inputs files.

Thanks,
___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons




On Jan 12, 2015, at 11:09 PM, "Glasser, Matthew"  
wrote:

> Is this HCP data or your own data?
> 
> Matt.
> 
> From: Marta Moreno 
> Date: Monday, January 12, 2015 at 10:06 PM
> To: Matt Glasser 
> Cc: "hcp-users@humanconnectome.org" 
> Subject: Re: [HCP-Users] -cifti-separate
> 
> What is the required surface input for -cifti-find-clusters?
> 
> Thanks,
> ___
> Marta Moreno-Ortega, Ph.D.
> Postdoctoral Research Fellow
> Division of Experimental Therapeutics
> New York State Psychiatric Institute
> Department of Psychiatry
> Columbia University College of Physicians and Surgeons
> 
> 
> 
> 
> On Jan 12, 2015, at 11:01 PM, "Glasser, Matthew"  
> wrote:
> 
>> I didn’t read your question closely enough.  You cannot make a surface from 
>> -cifti-separate (you can make data that you can display and analyze on a 
>> surface however).
>> 
>> Peace,
>> 
>> Matt.
>> 
>> From: Marta Moreno 
>> Date: Monday, January 12, 2015 at 9:59 PM
>> To: Matt Glasser 
>> Cc: "hcp-users@humanconnectome.org" 
>> Subject: Re: [HCP-Users] -cifti-separate
>> 
>> wb_command  COLUMN -metric CORTEX_RIGHT 
>> 
>> Thanks,
>> ___
>> Marta Moreno-Ortega, Ph.D.
>> Postdoctoral Research Fellow
>> Division of Experimental Therapeutics
>> New York State Psychiatric Institute
>> Department of Psychiatry
>> Columbia University College of Physicians and Surgeons
>> 
>> 
>> 
>> 
>> On Jan 12, 2015, at 10:54 PM, "Glasser, Matthew"  
>> wrote:
>> 
>>> Please post your wb_command -cifti-separate command line.
>>> 
>>> Peace,
>>> 
>>> Matt.
>>> 
>>> From: Marta Moreno 
>>> Date: Monday, January 12, 2015 at 9:52 PM
>>> To: "hcp-users@humanconnectome.org" 
>>> Subject: [HCP-Users] -cifti-separate
>>> 
>>> Hi users,
>>> 
>>> I am using the -cifti-separate command to generate a surface (i.e. CORTEX 
>>> RIGHT) to use as right surface input to the -cifti-find-clusters command.
>>> The output from cifti-separate is not recognized. How do I convert it to a 
>>> format that will work with cifti-find-clusters? I tried -metric-convert but 
>>> to no avail. 
>>> 
>>> Thank you,
>>> 
>>> ___
>>> Marta Moreno-Ortega, Ph.D.
>>> Postdoctoral Research Fellow
>>> Division of Experimental Therapeutics
>>> New York State Psychiatric Institute
>>> Department of Psychiatry
>>> Columbia University College of Physicians and Surgeons
>>> 
>>> 
>>> 
>>> 
>>> ___
>>> HCP-Users mailing list
>>> HCP-Users@humanconnectome.org
>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>>> 
>>>  
>>> The materials in this message are private and may contain Protected 
>>> Healthcare Information or other information of a sensitive nature. If you 
>>> are not the intended recipient, be advised that any unauthorized use, 
>>> disclosure, copying or the taking of any action in reliance on the contents 
>>> of this information is strictly prohibited. If you have received this email 
>>> in error, please immediately notify the sender via telephone or return mail.
>> 
>> 
>>  
>> The materials in this message are private and may contain Protected 
>> Healthcare Information or other information of a sensitive nature. If you 
>> are not the intended recipient, be advised that any unauthorized use, 
>> disclosure, copying or the taking of any action in reliance on the contents 
>> of this information is strictly prohibited. If you have received this email 
>> in error, please immediately notify the sender via telephone or return mail.
> 
> 
>  
> The materials in this message are private and may contain Protected 
> Healthcare Information or other information of a sensitive nature. If you are 
> not the intended recipient, be advised that any unauthorized use, disclosure, 
> copying or the taking of any action in reliance on the contents of this 
> information is strictly prohibited. If you have received this email in error, 
> please immediately notify the sender via telephone or return mail.


___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] -cifti-separate

[Glasser, Matthew]

Is this HCP data or your own data?


Matt.




From: Marta Moreno 
Date: Monday, January 12, 2015 at 10:06 PM
To: Matt Glasser 
Cc: "hcp-users@humanconnectome.org" 
Subject: Re: [HCP-Users] -cifti-separate





What is the required surface input for -cifti-find-clusters?


Thanks,




___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons








On Jan 12, 2015, at 11:01 PM, "Glasser, Matthew"  wrote:



I didn’t read your question closely enough.  You cannot make a surface from -cifti-separate (you can make data that you can display and analyze on a surface however).


Peace,


Matt.




From: Marta Moreno 
Date: Monday, January 12, 2015 at 9:59 PM
To: Matt Glasser 
Cc: "hcp-users@humanconnectome.org" 
Subject: Re: [HCP-Users] -cifti-separate





wb_command  COLUMN -metric CORTEX_RIGHT 


Thanks,



___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons








On Jan 12, 2015, at 10:54 PM, "Glasser, Matthew"  wrote:



Please post your wb_command -cifti-separate command line.


Peace,


Matt.




From: Marta Moreno 
Date: Monday, January 12, 2015 at 9:52 PM
To: "hcp-users@humanconnectome.org" 
Subject: [HCP-Users] -cifti-separate





Hi users,


I am using the -cifti-separate command to generate a surface (i.e. CORTEX RIGHT) to use as right surface input to the -cifti-find-clusters command.
The output from cifti-separate is not recognized. How do I convert it to a format that will work with cifti-find-clusters? I tried -metric-convert but to no avail. 


Thank you,




___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons










___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users






 



The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended
 recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone
 or return mail.











 



The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended
 recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone
 or return mail.











 



The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended
 recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone
 or return mail.
___HCP-Users mailing listHCP-Users@humanconnectome.orghttp://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] -cifti-separate

[Marta Moreno]

What is the required surface input for -cifti-find-clusters?

Thanks,
___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons




On Jan 12, 2015, at 11:01 PM, "Glasser, Matthew"  
wrote:

> I didn’t read your question closely enough.  You cannot make a surface from 
> -cifti-separate (you can make data that you can display and analyze on a 
> surface however).
> 
> Peace,
> 
> Matt.
> 
> From: Marta Moreno 
> Date: Monday, January 12, 2015 at 9:59 PM
> To: Matt Glasser 
> Cc: "hcp-users@humanconnectome.org" 
> Subject: Re: [HCP-Users] -cifti-separate
> 
> wb_command  COLUMN -metric CORTEX_RIGHT 
> 
> Thanks,
> ___
> Marta Moreno-Ortega, Ph.D.
> Postdoctoral Research Fellow
> Division of Experimental Therapeutics
> New York State Psychiatric Institute
> Department of Psychiatry
> Columbia University College of Physicians and Surgeons
> 
> 
> 
> 
> On Jan 12, 2015, at 10:54 PM, "Glasser, Matthew"  
> wrote:
> 
>> Please post your wb_command -cifti-separate command line.
>> 
>> Peace,
>> 
>> Matt.
>> 
>> From: Marta Moreno 
>> Date: Monday, January 12, 2015 at 9:52 PM
>> To: "hcp-users@humanconnectome.org" 
>> Subject: [HCP-Users] -cifti-separate
>> 
>> Hi users,
>> 
>> I am using the -cifti-separate command to generate a surface (i.e. CORTEX 
>> RIGHT) to use as right surface input to the -cifti-find-clusters command.
>> The output from cifti-separate is not recognized. How do I convert it to a 
>> format that will work with cifti-find-clusters? I tried -metric-convert but 
>> to no avail. 
>> 
>> Thank you,
>> 
>> ___
>> Marta Moreno-Ortega, Ph.D.
>> Postdoctoral Research Fellow
>> Division of Experimental Therapeutics
>> New York State Psychiatric Institute
>> Department of Psychiatry
>> Columbia University College of Physicians and Surgeons
>> 
>> 
>> 
>> 
>> ___
>> HCP-Users mailing list
>> HCP-Users@humanconnectome.org
>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>> 
>>  
>> The materials in this message are private and may contain Protected 
>> Healthcare Information or other information of a sensitive nature. If you 
>> are not the intended recipient, be advised that any unauthorized use, 
>> disclosure, copying or the taking of any action in reliance on the contents 
>> of this information is strictly prohibited. If you have received this email 
>> in error, please immediately notify the sender via telephone or return mail.
> 
> 
>  
> The materials in this message are private and may contain Protected 
> Healthcare Information or other information of a sensitive nature. If you are 
> not the intended recipient, be advised that any unauthorized use, disclosure, 
> copying or the taking of any action in reliance on the contents of this 
> information is strictly prohibited. If you have received this email in error, 
> please immediately notify the sender via telephone or return mail.


___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] -cifti-separate

[Glasser, Matthew]

I didn’t read your question closely enough.  You cannot make a surface from -cifti-separate (you can make data that you can display and analyze on a surface however).


Peace,


Matt.




From: Marta Moreno 
Date: Monday, January 12, 2015 at 9:59 PM
To: Matt Glasser 
Cc: "hcp-users@humanconnectome.org" 
Subject: Re: [HCP-Users] -cifti-separate





wb_command  COLUMN -metric CORTEX_RIGHT 


Thanks,



___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons








On Jan 12, 2015, at 10:54 PM, "Glasser, Matthew"  wrote:



Please post your wb_command -cifti-separate command line.


Peace,


Matt.




From: Marta Moreno 
Date: Monday, January 12, 2015 at 9:52 PM
To: "hcp-users@humanconnectome.org" 
Subject: [HCP-Users] -cifti-separate





Hi users,


I am using the -cifti-separate command to generate a surface (i.e. CORTEX RIGHT) to use as right surface input to the -cifti-find-clusters command.
The output from cifti-separate is not recognized. How do I convert it to a format that will work with cifti-find-clusters? I tried -metric-convert but to no avail. 


Thank you,




___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons










___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users






 



The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended
 recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone
 or return mail.










 



The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended
 recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone
 or return mail.
___HCP-Users mailing listHCP-Users@humanconnectome.orghttp://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] -cifti-separate

[Marta Moreno]

wb_command  COLUMN -metric CORTEX_RIGHT 

Thanks,
___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons




On Jan 12, 2015, at 10:54 PM, "Glasser, Matthew"  
wrote:

> Please post your wb_command -cifti-separate command line.
> 
> Peace,
> 
> Matt.
> 
> From: Marta Moreno 
> Date: Monday, January 12, 2015 at 9:52 PM
> To: "hcp-users@humanconnectome.org" 
> Subject: [HCP-Users] -cifti-separate
> 
> Hi users,
> 
> I am using the -cifti-separate command to generate a surface (i.e. CORTEX 
> RIGHT) to use as right surface input to the -cifti-find-clusters command.
> The output from cifti-separate is not recognized. How do I convert it to a 
> format that will work with cifti-find-clusters? I tried -metric-convert but 
> to no avail. 
> 
> Thank you,
> 
> ___
> Marta Moreno-Ortega, Ph.D.
> Postdoctoral Research Fellow
> Division of Experimental Therapeutics
> New York State Psychiatric Institute
> Department of Psychiatry
> Columbia University College of Physicians and Surgeons
> 
> 
> 
> 
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
> 
>  
> The materials in this message are private and may contain Protected 
> Healthcare Information or other information of a sensitive nature. If you are 
> not the intended recipient, be advised that any unauthorized use, disclosure, 
> copying or the taking of any action in reliance on the contents of this 
> information is strictly prohibited. If you have received this email in error, 
> please immediately notify the sender via telephone or return mail.


___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] -cifti-separate

[Glasser, Matthew]

Please post your wb_command -cifti-separate command line.


Peace,


Matt.




From: Marta Moreno 
Date: Monday, January 12, 2015 at 9:52 PM
To: "hcp-users@humanconnectome.org" 
Subject: [HCP-Users] -cifti-separate





Hi users,


I am using the -cifti-separate command to generate a surface (i.e. CORTEX RIGHT) to use as right surface input to the -cifti-find-clusters command.
The output from cifti-separate is not recognized. How do I convert it to a format that will work with cifti-find-clusters? I tried -metric-convert but to no avail. 


Thank you,




___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons










___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users





 



The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended
 recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone
 or return mail.
___HCP-Users mailing listHCP-Users@humanconnectome.orghttp://lists.humanconnectome.org/mailman/listinfo/hcp-users

[HCP-Users] -cifti-separate

[Marta Moreno]

Hi users,

I am using the -cifti-separate command to generate a surface (i.e. CORTEX 
RIGHT) to use as right surface input to the -cifti-find-clusters command.
The output from cifti-separate is not recognized. How do I convert it to a 
format that will work with cifti-find-clusters? I tried -metric-convert but to 
no avail. 

Thank you,

___
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons





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[HCP-Users] Ethics statement

[Andrew Reid]

Hi all,

We’re putting together a proposal centered on HCP data, but can’t seem to find 
a definitive ethics statement, apart from the Data Usage Agreement. I was just 
wondering if the ethics for HCP data collection is published somewhere?

Thanks,
Andrew

___ 

Andrew Reid 
Postdoctoral Fellow 
Institute of Neuroscience and Medicine (INM-1) 
Research Center Jülich 
Tel: +49 2461 61-8609






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