Re: [Yade-users] [Question #636692]: soil-tire contact by FEM-DEM coupling

2017-05-30 Thread Ryota Nakanishi
Question #636692 on Yade changed:
https://answers.launchpad.net/yade/+question/636692

Ryota Nakanishi posted a new comment:
Thank you Klaus, I understand why that is not suitable for calculating
stresses in the tire.

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Re: [Yade-users] [Question #636678]: Jupyter notebook support

2017-05-30 Thread ar115
Question #636678 on Yade changed:
https://answers.launchpad.net/yade/+question/636678

ar115 posted a new comment:
Hi Jan,

I understand from the standpoint of a developer who has much experience
maybe jupyter is not important. But I think supporting jupyter would
help to promote and advertise Yade more. And I thought that it should be
trivial to include support for it as jupyeter is basically python and
yade is nothing but python script.

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Re: [Yade-users] [Question #636692]: soil-tire contact by FEM-DEM coupling

2017-05-30 Thread Klaus Thoeni
Question #636692 on Yade changed:
https://answers.launchpad.net/yade/+question/636692

Status: Open => Answered

Klaus Thoeni proposed the following answer:
The current implementation of the pFacet is based on gridConnections,
i.e., it is a discrete element with "internal contact forces/moments" in
its edges. The formulation is not continuum based as the FEM. You could
calculate the stresses from the "internal contact forces" but not sure
how accurate this is going to be. In terms of computational effort, I
think it would be the same. However, the pFacet should be more robust
for contact tracking, especially for sliding contacts.

HTH
Klaus

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Re: [Yade-users] [Question #636692]: soil-tire contact by FEM-DEM coupling

2017-05-30 Thread Ryota Nakanishi
Question #636692 on Yade changed:
https://answers.launchpad.net/yade/+question/636692

Status: Answered => Open

Ryota Nakanishi is still having a problem:
Hi Klaus,

yeah, I know this paper and I'm thinking of using the method as an alternative 
plan.
But why is it unsuitable for watching stresses in the tire by this method? I 
think representing the tire including the internal parts of it enable to see 
stresses in it. But of course, this approach needs a lot of DEM elements and 
then require a lot of computation time. This is one of the reasons why I want 
to use FEM-DEM coupling.

Thanks a lot.
Ryota

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Re: [Yade-users] [Question #636692]: soil-tire contact by FEM-DEM coupling

2017-05-30 Thread Klaus Thoeni
Question #636692 on Yade changed:
https://answers.launchpad.net/yade/+question/636692

Klaus Thoeni proposed the following answer:
Hi Ryota,

not sure if it helps but yade has deformable elements the tire could be
represented with. If you are interested in the soil-tire interaction I
would consider this an excellent approach. Nevertheless, if you are
interested in stresses in the tire it would not be suitable. Have a look
here [1] for examples of using such pFacet elements and here [2] for the
theory.

HTH
Klaus

[1] https://github.com/yade/trunk/tree/master/examples/pfacet
[2] http://www.sciencedirect.com/science/article/pii/S0266114415001235

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Re: [Yade-users] [Question #635871]: Bonded Particle Model using JCFpmMat

2017-05-30 Thread Luc Scholtès
Question #635871 on Yade changed:
https://answers.launchpad.net/yade/+question/635871

Status: Open => Answered

Luc Scholtès proposed the following answer:
Hi Xavier,

I am not sure that sending you my script would really help since there
is nothing more in it (a line before to launch a simulation I performed
previously).

I did not exactly get your point about the outFile but you should have a
look at python doc about editing text file:

https://docs.python.org/2/tutorial/inputoutput.html#reading-and-writing-
files

Regarding how to run a compresion test with yade, you should have a look
at the uniaxial strainer:

https://yade-
dem.org/doc/yade.wrapper.html?highlight=uniaxial#yade.wrapper.UniaxialStrainer

Here is a basic script for simulating such test with JCFPM:

# -*- coding: utf-8 -*-
# -*- encoding=utf-8 -*-
from yade import pack, plot

# SIMULATIONS DEFINED HERE

 packing (previously constructed)
OUT='compressionTest_JCFPM'

 Simulation Control
rate=-0.01 #deformation rate 
iterMax=1 # maximum number of iterations 
saveVTK=2000 # saving output files for paraview

 Material microproperties 
intR=1.1 # allows near neighbour interaction (can be adjusted for every packing)
DENS=2500 # could be adapted to match material density: 
dens_DEM=dens_rock*(V_rock/V_particles)=dens_rock*1/(1-poro_DEM) -> packing 
porosity as to be computed? 
YOUNG=20e9 
FRICT=7
ALPHA=0.1
TENS=1e6 
COH=1e6

 material definition
def sphereMat(): return 
JCFpmMat(type=1,density=DENS,young=YOUNG,poisson=ALPHA,frictionAngle=radians(FRICT),tensileStrength=TENS,cohesion=COH)

 create the specimen
pred=pack.inCylinder((0,0,0),(0,1,0),0.25)
O.bodies.append(pack.regularHexa(pred,radius=0.025,gap=0.,material=sphereMat))

R=0
Rmax=0
nbSpheres=0.
for o in O.bodies:
 if isinstance(o.shape,Sphere):
   nbSpheres+=1
   R+=o.shape.radius
   if o.shape.radius>Rmax:
 Rmax=o.shape.radius
Rmean=R/nbSpheres

print 'nbSpheres=',nbSpheres,' | Rmean=',Rmean

 boundary condition (see utils.uniaxialTestFeatures
bb=utils.uniaxialTestFeatures()
negIds,posIds,longerAxis,crossSectionArea=bb['negIds'],bb['posIds'],bb['axis'],bb['area']
 
# ENGINES DEFINED HERE

O.engines=[
ForceResetter(),

InsertionSortCollider([Bo1_Sphere_Aabb(aabbEnlargeFactor=intR,label='Saabb')]),
InteractionLoop(

[Ig2_Sphere_Sphere_ScGeom(interactionDetectionFactor=intR,label='SSgeom')],

[Ip2_JCFpmMat_JCFpmMat_JCFpmPhys(cohesiveTresholdIteration=1,label='interactionPhys')],

[Law2_ScGeom_JCFpmPhys_JointedCohesiveFrictionalPM(recordCracks=True,Key=OUT,label='interactionLaw')]
),

UniaxialStrainer(strainRate=rate,axis=longerAxis,asymmetry=0,posIds=posIds,negIds=negIds,crossSectionArea=crossSectionArea,blockDisplacements=1,blockRotations=1,setSpeeds=0,stopStrain=0.1,dead=1,label='strainer'),

GlobalStiffnessTimeStepper(active=1,timeStepUpdateInterval=10,timestepSafetyCoefficient=0.5,
 defaultDt=utils.PWaveTimeStep()),
NewtonIntegrator(damping=0.4,label='newton'),

PyRunner(iterPeriod=int(100),initRun=True,command='recorder()',label='data'),

VTKRecorder(iterPeriod=int(saveVTK),initRun=True,fileName=OUT+'-',recorders=['spheres','jcfpm','cracks'],Key=OUT,label='vtk')
]

# RECORDER DEFINED HERE

def recorder():
yade.plot.addData({'i':O.iter,
   'eps':strainer.strain,
   'sigma':strainer.avgStress,
   'tc':interactionLaw.nbTensCracks,
   'sc':interactionLaw.nbShearCracks,
   'te':interactionLaw.totalTensCracksE,
   'se':interactionLaw.totalShearCracksE,
   'unbF':utils.unbalancedForce()})
plot.saveDataTxt(OUT)

# if you want to plot during simulation
plot.plots={'i':('sigma')}
plot.plot()

# PREPROCESSING

 manage interaction detection factor during the first timestep and then set 
default interaction range ((cf. A DEM model for soft and hard rock, Scholtes & 
Donze, JMPS 2013))
O.step();
### initializes the interaction detection factor
SSgeom.interactionDetectionFactor=-1.
Saabb.aabbEnlargeFactor=-1.

 coordination number verification
numSSlinks=0
numCohesivelinks=0
for i in O.interactions:
if isinstance(O.bodies[i.id1].shape,Sphere) and 
isinstance(O.bodies[i.id2].shape,Sphere):
  numSSlinks+=1
if i.phys.isCohesive :
  numCohesivelinks+=1

print "nblinks=", numSSlinks, " | nbCohesivelinks=", numCohesivelinks, " || 
Kcohesive=", 2.0*numCohesivelinks/nbSpheres
  
# SIMULATION REALLY STARTS HERE
strainer.dead=0
O.run(iterMax)

Regards

Luc

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Re: [Yade-users] [Question #635935]: creating a cloud of cuboids

2017-05-30 Thread rhaven
Question #635935 on Yade changed:
https://answers.launchpad.net/yade/+question/635935

rhaven confirmed that the question is solved:
Thanks Jan Stránský, that solved my question.

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Re: [Yade-users] [Question #635935]: creating a cloud of cuboids

2017-05-30 Thread rhaven
Question #635935 on Yade changed:
https://answers.launchpad.net/yade/+question/635935

Status: Answered => Solved

rhaven confirmed that the question is solved:
Hi Jan,
thanks, that works perfect!

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Re: [Yade-users] [Question #636692]: soil-tire contact by FEM-DEM coupling

2017-05-30 Thread Ryota Nakanishi
Question #636692 on Yade changed:
https://answers.launchpad.net/yade/+question/636692

Description changed to:
Hi all,

I would like to analyze contact problems between soil and tire by
applying the coupling between DEM, i.e. YADE, and FEM like Ref[1]. I
think what I need is surface coupling and volume coupling. I read the
example scripts in Ref[1], but I couldn’t understand how to execute
them.

Judging from the response in Q site of YADE, I think new documentation
is not yet available on the coupling of YADE with FEM, except for the
recent example using escrypt [2].  Does anyone know the recent status of
development on coupling of DEM and FEM by adding simple python script?

Thanks,

Ryota

Ref:
[1] J. Stránský & M.Jirásek.  OPEN SOURCE FEM-DEM COUPLING. Proc. 18th 
International Conference ENGINEERING MECHANICS 2012, pp. 1237-1251.
[2] https://yade-dem.org/doc/FEMxDEM.html

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Re: [Yade-users] [Question #636692]: soil-tire contact by FEM-DEM coupling

2017-05-30 Thread Ryota Nakanishi
Question #636692 on Yade changed:
https://answers.launchpad.net/yade/+question/636692

Ryota Nakanishi posted a new comment:
Hi Hongyang and Jan,

Thank you for your help, Hongyan! I will try your scripts.

And Thank you for your reply, Jan! I'll look forward to see your codes
on github.

Thanks a lot.
Ryota

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Re: [Yade-users] [Question #635871]: Bonded Particle Model using JCFpmMat

2017-05-30 Thread Xavier Thurman
Question #635871 on Yade changed:
https://answers.launchpad.net/yade/+question/635871

Status: Answered => Open

Xavier Thurman is still having a problem:
Hi Luc,

Thanks for your help, but I still have a question, what about the
outFile ? Is it exported using export.text()?

If possible, can you send a complete copy of your code to my email 
(xavierthur...@163.com)?
Besides, in your paper, 'A DEM model for soft and hard rocks: role of grain 
interlocking on strength', you got a strain-stress curve of compression. I also 
tried to do this, but I only got displacement-force curve of uniaxial 
compression. I have no idea to calculate the strain-stress curve of uniaxial 
compression. Please give me some hints.

Thanks a lot,

Xavier

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Re: [Yade-users] [Question #636692]: soil-tire contact by FEM-DEM coupling

2017-05-30 Thread Hongyang Cheng
Question #636692 on Yade changed:
https://answers.launchpad.net/yade/+question/636692

Hongyang Cheng posted a new comment:
Hi Ryota,

I uploaded the scripts on github some time ago.
Not sure it will work for others, but worth mentioning if one would like to 
have a try.

Note that the script actually comes from Jan's contribution years ago...

https://github.com/chyalexcheng/multiscale

Cheers

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Re: [Yade-users] [Question #635935]: creating a cloud of cuboids

2017-05-30 Thread Jan Stránský
Question #635935 on Yade changed:
https://answers.launchpad.net/yade/+question/635935

Status: Open => Answered

Jan Stránský proposed the following answer:
Hi Jesse,
yes, periodicity might be the reason, but it is difficult to say without the 
code. Try
for b O.bodies:
   b.state.pos = O.cell.wrapPt(b.state.pos)
before saving

Back to Bruno's answer, I see no problem there. If you first generate
loose packing of spheres, then you can replace each sphere by any
(smaller) shape and will get loose packing of whatever (elongated
cuboids, ellipsoids...).

cheers
Jan

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Re: [Yade-users] [Question #636678]: Jupyter notebook support

2017-05-30 Thread Jan Stránský
Question #636678 on Yade changed:
https://answers.launchpad.net/yade/+question/636678

Status: Open => Answered

Jan Stránský proposed the following answer:
Hello,

I am sorry, but this message seems to me like an (actually not very good) 
advertisement.. Put here by "Ask a question" button, but there is no question, 
just a (IMO not true) statement.
Do you want to create the support yourself? Do you want somebody else to create 
it?

> Will make working with Yade much more user friendly

Yade uses plain Python scripts for serious work, IPython is a sugar for testing 
and playing around, not the main user interface. So improving user friendliness 
is independent on IPython.
IMO, documentation and support from the community is more valuable for the 
users than IPython or similar 

> it would be very very useful to support jupyter notebook as well

"The Jupyter Notebook is an open-source web application that allows you to 
create and share documents that contain live code, equations, visualizations 
and explanatory text"
I see no point how it would be "very very useful". But maybe I am just too old 
school..

anyway, Yade is open source, so if somebody wants/needs to use a different user 
interface, he/she is free to do so / ask somebody else to do so
 
I apologize if I got something wrong
cheers
Jan

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Re: [Yade-users] [Question #632453]: Growing radius in randomDensePack

2017-05-30 Thread Jan Stránský
Question #632453 on Yade changed:
https://answers.launchpad.net/yade/+question/632453

Jan Stránský posted a new comment:
Hi Xavier,
you can grow radius until they touch a surrounding particle

A specific implementation could be something like this (not tested):
#
class ParticleGrower:
   def __init__(self, particles, multiplier=1.05):
  self.particles = set(p.id for p in particles)
  self.multiplier = multiplier
   def go(self):
  self.check()
  self.grow()
   def check(self):
  for pid in self.particles:
 p = O.bodies[pid]
 intrs = p.intrs()
 if intrs: # nonzero overlap
growParticle(p.id, 1./self.multiplier) # decrease particle back to 
non-overlapping configuration
self.particles.discard(pid) # do not deal with this particle any 
more
   def grow(self):
  for pid in self.particles:
 growParticle(pid, self.multiplier)

aloneParticles = [...] # list of particles, that are alone and make problems
grower = ParticleGrower(particles)

O.engines = [
   ...
   PyRunner(iterPeriod=1,command='grower.go()')
]

while grower.particles:
   O.run(10,True):
   print len(grower.particles)
#

cheers
Jan

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[Yade-users] [Question #636712]: import a clump and use it with makeClumpCloud

2017-05-30 Thread rhaven
New question #636712 on Yade:
https://answers.launchpad.net/yade/+question/636712

Hi
Sorry if this has already been answered, I didnt find the answer anywhere

I am importing a clump using 
c0 = yimport.textClumps('/tmp/clump0.txt')

and I want to use it with makeClumpCloud

however makeClumpCloud need a SpherePack. I can search through O.bodies to find 
the clump body, however how do I convert this into a SpherePack object? 

thanks in advance
Jesse


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Re: [Yade-users] [Question #636692]: soil-tire contact by FEM-DEM coupling

2017-05-30 Thread Jan Stránský
Question #636692 on Yade changed:
https://answers.launchpad.net/yade/+question/636692

Jan Stránský proposed the following answer:
Hi Ryota,
I will put my codes to github soon
cheers
Jan

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Re: [Yade-users] [Question #636692]: soil-tire contact by FEM-DEM coupling

2017-05-30 Thread Hongyang Cheng
Question #636692 on Yade changed:
https://answers.launchpad.net/yade/+question/636692

Status: Open => Answered

Hongyang Cheng proposed the following answer:
Dear Ryota,

I had worked on soil-geosynthetic interaction based on Ning's approach.
Please see [1] for the surface coupling scheme.

For further details, please contact me via h.ch...@utwente.nl.

[1] https://link.springer.com/chapter/10.1007/978-981-10-1926-5_47

Best regards,

Hongyang

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Re: [Yade-users] [Question #632475]: How to measure the void ratio for a select range?

2017-05-30 Thread Jan Stránský
Question #632475 on Yade changed:
https://answers.launchpad.net/yade/+question/632475

Jan Stránský posted a new comment:
Hello,
please be more specific where the problem is. How to do it theoretically? How 
to code it?
Also a minimum working example would be nice, describing where you don't know 
how to continue and what you want to achieve.
Thanks for more info
Jan

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Re: [Yade-users] [Question #632475]: How to measure the void ratio for a select range?

2017-05-30 Thread Launchpad Janitor
Question #632475 on Yade changed:
https://answers.launchpad.net/yade/+question/632475

Status: Open => Expired

Launchpad Janitor expired the question:
This question was expired because it remained in the 'Open' state
without activity for the last 15 days.

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Re: [Yade-users] [Question #632453]: Growing radius in randomDensePack

2017-05-30 Thread Launchpad Janitor
Question #632453 on Yade changed:
https://answers.launchpad.net/yade/+question/632453

Status: Open => Expired

Launchpad Janitor expired the question:
This question was expired because it remained in the 'Open' state
without activity for the last 15 days.

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[Yade-users] [Question #636692]: soil-tire contact by FEM-DEM coupling

2017-05-30 Thread Ryota Nakanishi
New question #636692 on Yade:
https://answers.launchpad.net/yade/+question/636692

Hi all,

I would like to analyze contact problems between soil and tire by applying the 
coupling between DEM, i.e. YADE, and FEM like Ref[1]. I think what I need is 
so-called surface coupling and volume coupling. I read the example scripts in 
Ref[1], but I couldn’t understand how to execute them.

Judging from the response in Q site of YADE, I think new documentation is not 
yet available on the coupling of YADE with FEM, except for the recent example 
using escrypt [2].  Does anyone know the recent status of development on 
coupling of DEM and FEM by adding simple python script?

Thanks, 

Ryota

Ref:
[1] J. Stránský & M.Jirásek.  OPEN SOURCE FEM-DEM COUPLING. Proc. 18th 
International Conference ENGINEERING MECHANICS 2012, pp. 1237-1251.
[2] https://yade-dem.org/doc/FEMxDEM.html

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Re: [Yade-users] [Question #635935]: creating a cloud of cuboids

2017-05-30 Thread rhaven
Question #635935 on Yade changed:
https://answers.launchpad.net/yade/+question/635935

rhaven gave more information on the question:
Hello,
Ive made small progress with method 2 and creating the clumps which I will 
later use with makeClumpCloud, 
I generate a small aggregate using makeCloud. The result looks like
http://pasteall.org/pic/index.php?id=115961
I then generate a clump from these spheres and export.

However when I import the geometry again it looks like this
http://pasteall.org/pic/index.php?id=115962

Is this occurring due to periodicity? 
How might I generate a small aggregate?

thank you in advance
Jesse

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