Hi!
I want to implement web services for BASE 2.11.0. the aim is to list
bioassay sets, select one and download into a pipeline (using
R,Perl-scripts) to perform data analysis ... And after all, upload it to
Base.
I downloaded Example Code for Web services examples for BASE 2
Yannick Lippi wrote:
Hi!
I want to implement web services for BASE 2.11.0. the aim is to list
bioassay sets, select one and download into a pipeline (using
R,Perl-scripts) to perform data analysis ... And after all, upload it to
Base.
I downloaded Example Code for Web services examples
Hmmm, I don't know if this is related, but having set up BASE, I can get
to http://localhost:8080/base no problem, but as soon as I log in:
HTTP Status 500 -
type Exception report
message
description The server encountered an internal error () that prevented
it from fulfilling this request.
This is most likely a secondary problem that is caused by some other problem
when the server is started. Can you check the log file in Tomcat to see if there
are more information. If you can't find anything you can try to enable
INFO-level
logging in BASE by setting the following property in the
This from my Catalina.out file:
13:44:51,875 ERROR [jsp]:723 - Servlet.service() for servlet jsp threw
exception
java.lang.NullPointerException
at
net.sf.basedb.clients.web.extensions.ExtensionsControl.useExtensions(Ext
ensionsControl.java:249)
at
This is the same stacktrace as you sent before. If you clean up the log file and
restart your server do you see anything in the log file that is related to the
start up that happens before you even try to load the login page in a web
browser?
If not, enable the info-level logging as described in
Ah, sorry, here is what comes out of a clean restart. This may very
well be the source of the errors, given that my Sys Admins gave me Red
hat's OpenJDK rather than Sun's. Could that be the problem?
15-May-2009 14:55:44 org.apache.catalina.core.AprLifecycleListener
lifecycleEvent
INFO: The
michael watson (IAH-C) wrote:
Ah, sorry, here is what comes out of a clean restart. This may very
well be the source of the errors, given that my Sys Admins gave me Red
hat's OpenJDK rather than Sun's. Could that be the problem?
This doesn't seem to be related with the Java version. I am
Thanks Nicklas, I'll go through the links you provided.
Marco.
Re: [base] Importing Annotations for Affymetrix Array designs
Nicklas Nordborg
Tue, 12 May 2009 10:42:48 -0700
Zak Mc Kracken wrote:
Hi all,
Does anyone know the details about importing probeset annotations for
