Dear CCP4ers,
after 3 years without working in structural biology and crystallography,
this summer I will have my PhD defence. As I am now working in a complete
different field I would be happy to know what happened in structural biology
the last years worth to mention. Is there finally the solve
Oh wow, talk about challenging a community to confront their own worst
fears of stagnation and irrelevance! Hehe - never mind cat in the
pigeons, more like a man-eating tiger in a shanty-town.
Wouldn't top of the list be dwindling budget priority? :-)
But okay, back to specifically
Dear Lena,
Structural biology has made enormous progress in the last two decades
but it has essentially been a cumulative process involving many people
and ideas. If you have to restrict the choice to a solve structure
button within the last three years then I would vote for Isabel Uson's
Three years is starting to be a reasonable time interval to see interesting
scientific progress. On the 1 or 2 years time scale it is hard, as anyone
organizing annual meetings will tell you.
One thing I would do is to browse the abstracts of the most recent American
Crystallographic
Dear Armando,
don't know about NACCESS, but I guess it is superseded by AREAIMOL in CCP4
(also in CCP4i); it outputs the accessible volume per atom in the pdb file and
per residue and per chain and some other statistics in the log-file.
Mark
Quoting Armando Albert:
Does anyone has got some
Hi Armando,
The information can be found here:
http://www.bioinf.manchester.ac.uk/naccess/
It looks like you'll need to compile it from source code. I can help you
with this, if you're unsure.
It also plugs in nicely to the excellent LIGPLOT, which I have found
incredibly useful (and, by
I think one of the options of PISA is to calculate accessibilities -- I
recall when I was learning how to use pisa that I saw this option.
Also DSSP outputs accessibilities per residue
Areaimol in ccp4 does too.
I have seen many programs in the internet, google accessibilities,
accessible
Hello,
Does somebody know the meaning of output of SC?
What is the meaning of From and To in Distance between surfaces?
From To Area Cumulative_Area %
Cumu. %
Similarly, what is the meaning of surface complementarity?
From To Number
dear cai
this is just because of problem with your pdb file,just try to remove
alternate confirmations from the pdb,it will work for you.
all the best
regards
Atul Kumar
IGIB
Delhi
India
On Sun, Jun 19, 2011 at 10:46 AM, Qixu Cai caiq...@gmail.com wrote:
Dear all,
When I use APBS Tools2
