Postdoctoral Fellowship Opportunity
Structure-based antigen engineering
Working in the laboratory of Dr. Tony Schryvers (University of Calgary), the
postdoctoral scholar will spearhead protein engineering and structural studies
to develop novel vaccine antigens. The ideal candidate will have ex
Dear colleagues,
Registration closes this Friday (15th Feb.) for the 2013 EMBO practical
course on "Computational Structural Biology - from data to structure to
function"
http://events.embo.org/13-comp-structure/
The course covers computational aspects of protein structure
determination, v
Hi Emmanuel -
You might consider using MSMS. If you wish to visualize it, there is a PyMOL
script available: http://pymolwiki.org/index.php/Msms.
Relatedly, one should keep in mind that, while a 10 or 50 Angstrom probe will
give you a general idea of accessible surface, if there is any shape
Hi Emmanuel,
On Wed, 2013-02-13 16:30 EST, "Sampson, Jared"
wrote:
> You might consider using MSMS. If you wish to visualize it, there is a
> PyMOL script available: http://pymolwiki.org/index.php/Msms.
>
> Relatedly, one should keep in mind that, while a 10 or 50 Angstrom probe
> will give
Hi there,
I have an off-toptic question about Graphics card. My searches on pymolwiki and
ccp4bb archives resulted in the following conclusion: Coot and pymol are not
compatible with the new GeForce graphics cards. Hoewver, most of the posts I
found were from 2009 and 2010. Does anyone here hav
BS"D
Dear Alex,
I'm not sure why you think the new Geforce cards will be an issue. Please
clarify.
As far as stereo is concerned, Geforce cards only give stereo under Windows,
not Linux. If you want stereo under Linux you need the Quadro cards with the
stereo option (for example, Quadro
Harry,
I found this on pymol wiki "NVidia 3D NVision kit only supports DirectX
software for GeForce (gaming cards) on Windows; users are reporting that
they are not able to run PyMOL with NVision with these cards. Get a newer
model low end quadro (> G8x graphics core) without the 3 pin mini din (e
Hi Alex,
Thanks for asking before buying. You've avoided a common mistake.
If you want to do 120 Hz stereoscopic 3D you must have a Quadro card.
GeForce cards, even the really expensive ones, are made for games (and
DirectX) not science. I've seen people pay upwards of $1000 for a
top-of-the-line
Hi Jason,
aren't the current gaming monitors all (or mostly) 120 Hz? At least
companies like alianware sell GeForce together with 120 Hz monitors.
A
On Wed, Feb 13, 2013 at 4:02 PM, Jason Vertrees <
jason.vertr...@schrodinger.com> wrote:
> Hi Alex,
>
> Thanks for asking before buying. You've av
Hi,
They might be, but please be aware that nearly all scientific applications
use OpenGL for drawing and 3D. Many games use DirectX, an MS standard, for
that. The capabilities differ by standard (OpenGL vs DirectX), hardware
(NVidia GeForce, NVidia Quadro, AMD, Intel, etc) and operating system.
Hi everyone,
Dr. M.L.P. Collins at the University of Wisconsin-Milwaukee has developed a new
method for making large quantities of active, viable proteins using
Rhodospirillum rubrum as a host. R. Rubrum is a bacterium that has
traditionally been studied for its simple photosynthetic system, h
Dear All:
I plan to use X-ray crystallography method to study the S-nitrosylated
protein structure.
The native protein crystals diffracted to 2A with synchrontron. I now have
the crystals of S-ntrosylated protein.
Since S-NO moiety appears to be unstable to synchrotron radiation, could
you advic
Maybe you can try different energies hoping that damage is wavelength
dependent. It must be dose dependent though, so you may consider merging short
sweeps from multiple crystals.
Original message
From: Uma Ratu
Date:
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] S-nitrosyl
Hi,
Since it is mentioned, I would like to take this chance to clarify:
We have used the Zalman and LG 2342P under Linux, Windows(XP and 7) and a VM
Windows within a Linux system, on either desktop (with a minimal on-board
graphic chip) or laptops. The monitor is quite plug-and-play in all case
Hi Alex,
The graphical computational power of even the lowest-end graphic chips these
days will suffice the displaying of our models. To give you some idea: we
are still using a Quadro FX 1000 card and an old CRT on one of our stereo
systems; my 6-year old laptop has an ATI Radeon X1300, which
Hi Zhijie,
thanks for the link. I was actually referring to that post. Can you please
tell me what graphics card you are using?
Alex
On Wed, Feb 13, 2013 at 6:16 PM, Zhijie Li wrote:
> **
> Hi,
>
> Since it is mentioned, I would like to take this chance to clarify:
>
> We have used the Zalman
Hi Alex,
We actually didn't invest on a discrete video card for the LG-D2342P system.
The one we are using on the LG-D2342P desktop is the integrated Intel HD
graphic 2000 chip, which is physically located in the CPU. The CPU is i7-2600.
We installed a Linux OS on this desktop and also run a Vi
Dear ccp4
I apologise for the straightforward question. I'm just a bit confused about the
"observed reflections" quoted in tables. What exactly is this and should it
include outer shell separately?
Best
Careina
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