Thank you, Rachel. I will try this suggestion out. -Original Message-From: kra...@rcsb.rutgers.eduSent: Mon, 26 Jan 2015 09:22:00 -0700To: patrick.coss...@inbox.comSubject: Re: [ccp4bb] extracting PHENIX structures (help-6435)
Dear Patrick,
You can try to write a
Dear George and Patrick,
It is particularly tricky to do such a search for SHELX because there
are different ways of referencing it for refinement (SHELX, SHELX-76,
SHELXL, SHELXL-97, SHELXL-2014 etc.) and there are other ways of using
SHELX, in particular SHELXD for finding the heavy atom sub
On Sun, Jan 25, 2015 at 12:25 AM, Kay Diederichs <
kay.diederi...@uni-konstanz.de> wrote:
> Here, I subtracted the "Phenix and Refmac" entries from the total Phenix
> count, because it seems likely that Phenix was used for other purposes than
> refinement.
>
Actually, based on my skimming of meth
I did the same search as above (Patrick).
I am confused how with SHELX you can get 320 (when using SOFTWARE) and then
when using TEXT only 130.
I get the same no's.
If the word SHELX exists as follows
SOFTWARE USED: SHELX
the same "word" (SHELX) will be picked up when we do a text search as wel
Two additions:
a) SHELXL accounts for 16 X-Ray depositions in 2014; 2 of them also use Phenix.
b) one can select "Does NOT Contain:" instead of "Contains:". Excluding, in
this manner, SHELXL, Phenix, Refmac, Buster and CNS, one gets 12 entries.
These employ mostly CNX, but also coot (!), X-PLOR,
Hi Patrick,
I'd do the following:
- go to www.rcsb.org and choose "Advanced Search"
- choose "All/Experimental Type/Molecule Type", choose "Experimental Method"
and set to X-ray
- click the "+" next to "Add Search Criteria"
- in the pulldown menu, choose "Software" and enter "Phenix" (leave as
"
ick
>
> > -Original Message-
> > From: t...@shelx.uni-ac.gwdg.de
> > Sent: Sat, 24 Jan 2015 20:35:54 +0100
> > To: ccp4bb@jiscmail.ac.uk
> > Subject: Re: [ccp4bb] extracting PHENIX structures
> >
> > Dear Patrick,
> >
> > those entr
; To: ccp4bb@jiscmail.ac.uk
> Subject: Re: [ccp4bb] extracting PHENIX structures
>
> Dear Patrick,
>
> those entries are entered by the user and not very reliable. E.g. I
> would not say 'CCP4 refined' but 'refmac5 refined' or 'restrain
> refined', as muc
Dear Patrick,
those entries are entered by the user and not very reliable. E.g. I
would not say 'CCP4 refined' but 'refmac5 refined' or 'restrain
refined', as much as 'SHELXL refined' and 'phenix.refine refined'. This
makes two different ways between the two of us - take all depositors and
I guess
Hi,
not directly related but I wanted to know how to extract from the PDB all the
PHENIX/CCP4 refined structures currently deposited.
Do I use the "text" search in quarry to get the result or do I use the software?
I tried it for both but seems to give different results (no's).
I tried for ano
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