Ed,
Did you tell scalepack not to add partials? It certainly shouldn't be
doing this when your oscillation ranges overlap - perhaps it is smart
enough to realize this is the situation, perhaps not.
Marian Szebenyi
MacCHESS
Ed Pozharski wrote:
Ed,
thanks - this is a great suggestion. Unfor
Ethan,
manual handling of the mosaicity seems to help. There are now plenty of
other things to sort out, but at least scalepack does not crash anymore.
I used lower fixed mosaicity setting in denzo and fixed it in scalepack.
Another issue is that there was apparently something funny about first 5
Ed,
thanks - this is a great suggestion. Unfortunately, it's not the
problem - I had the "oscillation start 0.0 range 0.5 step 0.001"
statement in the denzo input file. Denzo runs fine and there is no
slippage issue. I tried turning off postrefinement and both batch and
crystal rotx refinement (
__
> > From: CCP4 bulletin board [ccp...@jiscmail.ac.uk] On Behalf Of Ed Pozharski
> > [epozh...@umaryland.edu]
> > Sent: Monday, February 22, 2010 5:23 PM
> > To: CCP4BB@JISCMAIL.AC.UK
> > Subject: [ccp4bb] short step
> >
>
Edward A. Berry wrote:
Try grepping "crystal" your .x files (or whatever you called the
denzo output files). Also grep for "start".
By default denzo updates start-phi to the end
of the previous oscillation. Since 0,5 degree is within radius of
convergence, it re-refines crystal rotx to be compat
Try grepping "crystal" your .x files (or whatever you called the
denzo output files). Also grep for "start".
By default denzo updates start-phi to the end
of the previous oscillation. Since 0,5 degree is within radius of
convergence, it re-refines crystal rotx to be compatible with this
assumpti
On Monday 22 February 2010 15:23:35 Ed Pozharski wrote:
> I want to process bunch of frames with extremely short step - i.e. these
> are 0.5degree oscillations but crystal only rotates by 1 degree over
> 1000 frames (I would have kept it at the same orientation if Rigaku
> control software would al
I want to process bunch of frames with extremely short step - i.e. these
are 0.5degree oscillations but crystal only rotates by 1 degree over
1000 frames (I would have kept it at the same orientation if Rigaku
control software would allow zero step). Denzo can process the frames
all right, but sca
