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> martin.mo...@ki.se | ki.se
> __
> Karolinska Institutet – a medical university
>
> -Original Message-
> From: Clemens Vonrhein
> Sent: den 24 mars 2023 10:26
> To: Martin Moche
> Cc: COOT@jiscmail.ac
Dear all,
just to avoid confusion: BUSTER version numbering is maybe a bit
unusual and differs between academic and commercial users (for various
historic reasons). The most relevant version information is the
release data, ie 20230217 currently [1].
Another short note: we also don't see that sph
Hi Paul,
On Sat, Sep 18, 2021 at 11:56:33AM +0100, Paul Emsley wrote:
> Your message will make Clemens laugh - shadenfreude - or some such :-)
Not at all: it's much better when software works exactly as intended -
as Coot nearly always does!
Cheers
Clemens
#
Hi Guillaume,
On Thu, Jul 16, 2020 at 01:40:32PM +0200, Guillaume Gaullier wrote:
> Would you mind explaining what you changed in the build-it script to make it
> work?
This is the patch:
--- build-it~2020-07-15 10:34:50.037806692 +0200
+++ build-it 2020-07-15 14:56:31.593086262 +02
Hi Erwin,
On Thu, Jul 16, 2020 at 09:43:26AM +0200, Erwin Pannecoucke wrote:
> Just popping in here to confirm that the workflow suggested by Clemens
> below, is indeed the way to go.
> This night, I was able to compile coot on WSL1/Ubuntu 18.04 LTS.
Oddly enough, I failed on Ubuntu 18.04 LTS (
Hi Paul,
On Wed, Jul 15, 2020 at 08:28:36AM +0100, Paul Emsley wrote:
> > So you are saying that one should use the "refinement" branch in order
> > to get the latest "Coot"?
>
>
> The build-it script builds a tar file that is generated from the refinement
> branch.
Aaah - that was the bit of i
Hi Paul,
On Fri, Jul 10, 2020 at 11:16:55AM +0100, Paul Emsley wrote:
> Maybe you could give today's reversion a bash
> (efde451d59318f6f58c7f8295c93c86f764126e5)
What does that mean? I guess it is meant as a git commit ID, right?
Is that a commit relative to https://github.com/pemsley/coot? The
Dear all,
On Fri, Jul 10, 2020 at 03:56:28PM +0100, Andrew Sharff wrote:
> I would love to try today's revision - where can I download a MacOS binary
> from? You only have linux binaries on your website - we only see the
> problems on MacOS.
Following on from Andrew's question: I must confess tha
rs
Clemens
[1]
http://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Categories/chem_comp_chir.html
[2] http://www.ccp4.ac.uk/html/mon_lib.html
--
*------
* Clemens Vonrhein, Ph.D. vonrhein AT GlobalPhasing DOT com
* Global Phasing Ltd.,
ey-bindings for adding, editing and
deleting 3D annotations? And how do I automatically save/load
those upong startup/exiting?
Sorry if these questions are already answered somewhere else ... any
pointer/hint would be very much apreciated!
Cheers
Clemens
--
*--
tting frustrated by too many red bars and (equally
important) over-excited by bogus greenery?
Cheers
Clemens
--
***
* Clemens Vonrhein, Ph.D. vonrhein AT GlobalPhasing DOT com
*
*
ediate state of bla bla bla bla'
;-)
Cheers
Clemens
--
*******
* Clemens Vonrhein, Ph.D. vonrhein AT GlobalPhasing DOT com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park
* Cambridge CB3 0AX, UK
*--
* BUSTER Development Group (http://www.globalphasing.com)
***
at what you see?
This has always worked as expected, yes. Running
% coot --pdb refine.pdb --auto refine.mtz
after BUSTER works perfectly for me every time ;-)
Cheers
Clemens
--
*******
* Clemens Vonrhein, Ph.D. vonrhein AT GlobalPh
Dear Alexander,
FCTR looks like it is coming from a BUSTER refinement:
http://www.globalphasing.com/buster/manual/buster/manual/chapter5.html#mlphas
This column is obviously only intended for looking at maps (however:
usually one looks at the 2FOFCWT/PH2FOFCWT and FOFCWT/PHFOFCWT maps).
So th
m I wouldn't go
that way. But for a tar.gz file that just gets unpacked it is a
solution.
Cheers
Clemens
--
*******
* Clemens Vonrhein, Ph.D. vonrhein AT GlobalPhasing DOT com
*
* Global Phasing Ltd.
* Sheraton Hous
ess this $ORIGIN feature isn't very widely known ... see e.g.
http://www.scons.org/wiki/UsingOrigin
http://linuxreviews.org/man/ld.so/
http://blogs.sun.com/dipol/entry/dynamic_libraries_rpath_and_mac
http://www.codeshorts.ca/tag/osx/
It works great for us.
Cheers
Clemens
--
*
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