[COOT] Dynarama window not changing background allowed region

, Engin -- Engin Özkan Post-doctoral Scholar Laboratory of K. Christopher Garcia Howard Hughes Medical Institute Dept of Molecular and Cellular Physiology 279 Campus Drive, Beckman Center B173 Stanford School of Medicine Stanford, CA 94305 ph: (650)-498-7111

Re: [COOT] Dynarama window not changing background allowed region

installation, still rev 2965). Also on linux (RHEL 5.4, Coot rev 2969 from SBGrid). I am surprised to not hear a peep by anyone. Nobody is seeing this? Hi Engin, Sorry for my delay in getting back to you. I see this bug too. I'll fix it ASAP. Paul. -- Engin Özkan Post-doctoral Sc

Re: [COOT] Coot 0.6.2 CRYST1 problems ?

Fax: +1-410-955-3655 http://web.mac.com/bosch_lab/ ___ David Komander MRC Laboratory of Molecular Biology Hills Road, Cambridge CB2 0QH, UK http://www2.mrc-lmb.cam.ac.uk/groups/dk/ http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/d-komander -- Engin Özkan

[COOT] Nomenclature errors

Dear coot users and developers, We are using coot 0.7-pre-1 (rev 3633) in the lab on linux and Mac machines, and have observed something odd that we did not see before. Most (all?) pdb files when opened give a (harmless) warning that says "Molecule x has nomenclature errors. Correct them?" The

Re: [COOT] Nomenclature errors

hinav JCSG@SSRL, SLAC Phone: (650) 926-2992 Fax: (650) 926-3292 On 09/15/2011 09:47 AM, Engin Özkan wrote: Dear coot users and developers, We are using coot 0.7-pre-1 (rev 3633) in the lab on linux and Mac machines, and have observed something odd that we did not see before. Most (all?)

[COOT] symmetry molecule not showing

Dear Coot users and developers, I have trouble seeing certain symmetry-related molecules sometimes. This is extremely acute when the molecule being solved is very elongated. In one bad case, with display radius turned to 63 Angstroms and Calpha being displayed, I can see a million symmetry rel

Re: [COOT] symmetry molecule not showing

sley wrote: On 12/03/12 16:17, Engin Özkan wrote: I have trouble seeing certain symmetry-related molecules sometimes. This is extremely acute when the molecule being solved is very elongated. In one bad case, with display radius turned to 63 Angstroms and Calpha being displayed, I can see

Re: [COOT] Help needed with copy-residue-range-from-ncs-master-to-chains

;(*arg) ^ SyntaxError: unexpected EOF while parsing and BL INFO:: command input is: copy-residue-range-from-ncs-master-to-chains(0,"B",273,278,list("A")) Traceback (most recent call last): File "C:\WinCoot\share\coot\python\coot_gui.py", line 209, in do_functio

[COOT] Coot on OS 10.6 - not starting

000 in ?? () #1 0x0001033f90f7 in PyEval_GetGlobals () #2 0x000103419382 in PyImport_Import () #3 0x0001034195b8 in PyImport_ImportModule () #4 0x0001033590e8 in PyCapsule_Import () #5 0x00010040b01e in SWIG_Python_GetModule () #6 0x00010046b01d in init_coot

Re: [COOT] Coot on OS 10.6 - not starting

is there a way to keep coot going on SL? Andreas On 24/04/2013 8:57, Engin Özkan wrote: Hi everybody, After a long break, I tried to run coot on my 10.6.8 Mac, but could not even start coot. I am running the latest fink package (0.7.1-pre-4562), but I also tried the latest stand-alone binary

Re: [COOT] Coot on OS 10.6 - not starting

Happy to see that Bill Scott's coot fink package and his Standalone Coot work on 10.6.8 now. Updated to the latest stable (0.7.1). Many thanks! Engin On 4/24/13 3:16 PM, Engin Özkan wrote: I did see that post back when it was posted. I assumed the issue was fixed because I saw an upda

Re: [COOT] Conflicting opinions on what constitutes an alpha1-6 L-fucose between Coot and Privateer

glycosidic_linkage_type() for A 459 NAG,A 464 FUC returns "ALPHA1-6" <- Program versions: Coot 0.9.8.93 EL (ccp4) on Gentoo Linux 64 bit Privateer version MKIV : 06/02/2 CCP4 8.0.019 on Gentoo Linux 64 bit With bes

Re: [COOT] Conflicting opinions on what constitutes an alpha1-6 L-fucose between Coot and Privateer

check if there is a difference between the two. Thank you very much for your suggestion! With best regards, Markus On 2024-04-18 13:48, Engin Özkan wrote: Caution! This message was sent from outside the University of Manitoba. Hi Markus, There were reports to the ccp4bb and phenixbb back

Re: [COOT] Conflicting opinions on what constitutes an alpha1-6 L-fucose between Coot and Privateer

t;G" 2 ""]     BETA1-4 BMA [spec: 1 "G" 3 ""]     ALPHA1-3 MAN [spec: 1 "G" 4 ""]     BETA1-2 NAG [spec: 1 "G" 5 ""]     BETA1-6 MAN [spec: 1 "G" 6 "&quo