Re: Communicating with the Nodes in Intranet

2018-03-05 Thread Amila Jayasekara
Hi Hitesh, Are you expecting zookeeper instances to run in login nodes of the supercomputers? If yes, I am not very sure how feasible that is going to be. I guess Suresh can give more details (using obsolete GSI-SSH as an example). Thanks -AJ On Thu, Feb 22, 2018 at 10:02 PM, Hitesh Kumar

Re: Requirements for an updated portal architecture

2017-02-07 Thread Amila Jayasekara
Sorry, mistakenly pressed "Send" button before I finish typing :-). On Tue, Feb 7, 2017 at 11:01 AM, Amila Jayasekara <thejaka.am...@gmail.com> wrote: > Hi Marcus, > > Nice summary of requirements. > > Some questions inline. > > On Fri, Feb 3, 2017 at 4

Re: Requirements for an updated portal architecture

2017-02-07 Thread Amila Jayasekara
Hi Marcus, Nice summary of requirements. Some questions inline. On Fri, Feb 3, 2017 at 4:31 PM, Christie, Marcus Aaron wrote: > Dev, > > I’ve been taking feedback from other Airavata developers and working on > requirements for a next generation architecture for the PGA.

Re: [#Spring17-Airavata-Courses] : Distributed Workload Management for Airavata

2017-02-01 Thread Amila Jayasekara
Hi Gourav, Sorry, I did not understand your question. Specifically I am having trouble relating "work load management" to options you suggest (RPC, message based etc.). So what exactly you mean by "workload management" ? What is work in this context ? Also, I did not understand what you meant by

Re: WSO2 IS Issue

2017-01-25 Thread Amila Jayasekara
Hi Supun, Did you try to investigate the issue reported in the error message ? i.e., the error says, LDAP cannot bind 10389. Check whether port 10389 is in use in your machine. Maybe you have another Airavata (or IS) instance running. Thanks -Amila On Wed, Jan 25, 2017 at 4:24 AM, Supun Arunoda

Re: Airavata 0.17 Release planning

2017-01-09 Thread Amila Jayasekara
How about Airavata 1.0 ? -Amila On Fri, Jan 6, 2017 at 2:40 PM, Suresh Marru wrote: > Hi All, > > Looks like we have significant progress since Airavata 0.16 release in > late July 2016. I can volunteer to be the release manager for 0.17. Can we > do a feature freeze and

Re: WSO2 Identity Server + CILogon integration

2016-12-06 Thread Amila Jayasekara
Hi Marcus, I did not quite understand the use case here. Could you please explain the exact use case ? My initial guess is following : a user with CILogon credentials trying to login to airavata. Assuming this use case, I have following questions related to your approach. 1. What exactly is the

Re: User compute and storage resources

2016-11-21 Thread Amila Jayasekara
Just curious, what is " user compute and storage resources" ? -Amila On Sun, Nov 20, 2016 at 2:44 AM, Supun Nakandala wrote: > Hi Jarett, > > The user compute and storage resources implementation is currently in the > develop branch. So if you want to use them you

Re: Apache Jenkins emails

2016-10-16 Thread Amila Jayasekara
I agree with Suresh. The build system should set up correctly only to notify correct build errors and whenever there is a build failure person who is responsible for the failure should commit to fixing it. On Sun, Oct 16, 2016 at 6:38 PM, Suresh Marru wrote: > since there is

Re: Ansible script to deploy Airavata on AWS

2016-09-01 Thread Amila Jayasekara
Nice ! Shouldn't this be part of the distribution ? Thanks -AJ On Thu, Sep 1, 2016 at 1:25 PM, Shameera Rathnayaka wrote: > Hi All, > > I wrote ansible scripts to deploy Apache Airavata and all its > prerequisites on AWS instances (you can use this script to deploy any

Re: [DISCUSS] Blogs for Airavata

2016-08-21 Thread Amila Jayasekara
I also like the idea of a Blog and I do agree with Sachith that it is a good starting point, and it is a helpful place to figure out what is going on right now with the project. However, I do not see blogs as a replacement for the wiki. Blogs are unstructured and unorganized. Therefore, it is

Re: Refactor JIRA Component list

2016-08-04 Thread Amila Jayasekara
Some feedback as follows; 1. Unit-test should not be a separate component. Every component must have unit tests and issues with unit tests must go into the respective component. 2. The release should also not be a separate component. Every component should have a release version, and issues

Re: Connection timeout settings

2016-05-13 Thread Amila Jayasekara
Hi Marlon, I am trying to recall some of my old memory related to job submission implementations. As far as I can remember, we implemented two-phase commit protocol with GSISSH. With two-phase commit protocol, we first get the job id and then submit the job in a single atomic step (So losing job

Re: Introducing gatewayId to SecurityToken in Airavata API

2015-12-13 Thread Amila Jayasekara
imentId. > > The idea is to make gatewayId a mandatory field in SecurityToken and > validate it at the API security manager. > > On Sun, Dec 13, 2015 at 12:23 PM, Amila Jayasekara < > thejaka.am...@gmail.com> wrote: > >> >> >> On Fri, Dec 11, 2015 at 10:17 PM, Sup

Re: Airavata logos

2015-10-09 Thread Amila Jayasekara
+1 for logos similar to [1] or [2]. Thanks -Thejaka On Thu, Oct 8, 2015 at 6:46 PM, Saminda Wijeratne wrote: > Thanks Nipurn for enlightening us with the details. :) > > I always thought the simpler the logo looks the better it fits with even > along with more elaborate

Re: Airavata logos

2015-10-08 Thread Amila Jayasekara
Just curious, any particular reason why we need to change existing logos ? Out of the logos attached, I definitely dont like the 3-headed elephant (logos in last column). Thanks -Thejaka On Tue, Oct 6, 2015 at 9:24 AM, Pierce, Marlon wrote: > Hi all— > > We are looking at new

Python Metaclasses

2015-08-17 Thread Amila Jayasekara
Hi, I was reading [1] and thought it might have a use for Airavata API also. [1] https://jakevdp.github.io/blog/2012/12/01/a-primer-on-python-metaclasses/ Thanks -Amila

Re: Enforcing cross cutting aspects on Thrift API calls with Guice AOP framework

2015-07-22 Thread Amila Jayasekara
Just curious; How do Guice intercept Thrift calls ? -AJ On Mon, Jul 20, 2015 at 11:20 AM, Hasini Gunasinghe hasi7...@gmail.com wrote: Hi Marlon, On Mon, Jul 20, 2015 at 8:58 AM, Pierce, Marlon marpi...@iu.edu wrote: Thanks, Hasini. This is an interesting point. Compared to Web services

Re: Airavata API server service port 8930

2015-07-01 Thread Amila Jayasekara
Not related to main question but noted an inconsistency. startAiravataServer, StartOrchestratorServer and StartGfacServer. Why AiravataAPIServer is different from others ? and are these StartXXX are methods ? then they should probably start with simple case. Thanks -Thejaka On Tue, Jun 30,

Re: [jira] [Commented] (AIRAVATA-1624) [GSoC] Securing Airavata API

2015-06-02 Thread Amila Jayasekara
/display/AIRAVATA/Sprint+1, but of course, I am happy to do a demo too so that we can discuss any feedback. Thanks Best Regards, Hasini. On Thu, May 28, 2015 at 1:50 PM, Amila Jayasekara thejaka.am...@gmail.com wrote: Hi Hasini, Would it be possible for you to do a demo

Re: [jira] [Commented] (AIRAVATA-1624) [GSoC] Securing Airavata API

2015-05-28 Thread Amila Jayasekara
Hi Hasini, Would it be possible for you to do a demo on this ? Thanks -Thejaka On Sun, May 24, 2015 at 11:34 PM, Hasini Gunasinghe (JIRA) j...@apache.org wrote: [

Apache Jenkins for Airavata

2015-05-20 Thread Amila Jayasekara
Hi, Does anyone paying attention to Jenkins build failures and instabilities ? I can see lot of mails from Jenkins. I could filter out these mails but the idea should be to keep Jenkins stable and alive. Regards -AJ

Re: Monitor jobs by JobName if JobId is null

2015-04-26 Thread Amila Jayasekara
Its quite unusual that resource manager doesn't return the job id. Can you give the details of specific occurrence ? If qsub or sbatch doesn't return job id how can a person identify which job he/she submitted ? (Even without airavata) Thanks -Thejaka On Fri, Apr 24, 2015 at 1:55 PM, Lahiru

Re: Monitor jobs by JobName if JobId is null

2015-04-26 Thread Amila Jayasekara
to the resource. We have a handle to monitoring the job status. Well, i dont quite understand how you monitor jobs without a handle (the job id) to the submitted job when you dont have the job id. Thanks -Amila On Sun, Apr 26, 2015 at 12:35 PM, Amila Jayasekara thejaka.am...@gmail.com wrote: Its

Re: Worker based communication between orchestrator and gfac

2015-03-23 Thread Amila Jayasekara
On Mon, Mar 23, 2015 at 3:41 PM, Lahiru Gunathilake glah...@gmail.com wrote: Hi Devs, I have merged the branch I created to implement $subject. Please make sure you start a rabbitmq instance before airavata start. Cant we add rabbitmq starting to airavata.sh ? Thanks -AJ After we test

Re: Reliability and Scalability Testing

2015-03-23 Thread Amila Jayasekara
On Sun, Mar 22, 2015 at 11:46 PM, Suresh Marru sma...@apache.org wrote: Hi All, Current Integration tests cover a decent amount of basic capabilities. These tests are useful to ensure all the components are working in harmony. But as we move towards a 1.0 release and announce Airavata is

Re: PHP Reference Gateway Donation into Airavata Repo

2015-02-16 Thread Amila Jayasekara
+1 Thanks -Amila On Thu, Feb 12, 2015 at 2:31 PM, Suresh Marru sma...@apache.org wrote: Hi All, XBaya has become clumsy to showcase all of the Airavata’s features. It is still good as a workflow composer and monitoring tool but we probably want to focus on the PHP examples for

Re: Improvements to Experiment input data model in order to support Gaussian application

2014-12-10 Thread Amila Jayasekara
to construct a valid command line, for example. On the other hand, I don't think we need the InputMetadataType that Chathuri introduces below. This overlaps with what is already in the compute resource description fields. Marlon On 12/8/14, 10:17 PM, Amila Jayasekara wrote: Hi Chathuri, I

Re: Improvements to Experiment input data model in order to support Gaussian application

2014-12-08 Thread Amila Jayasekara
Hi Chathuri, I do not know anything about Gaussian. So its kind of hard for me to understand what exactly is the meaning of the structures you introduced and why you exactly need those structures. A more important question is how to come up with a more abstract and generic thrift IDLS so that

Re: Running the larvel-pga locally

2014-11-29 Thread Amila Jayasekara
Wow this is a long list. Isnt it possible to create a distribution and script some/all of these configuration steps ? Will be easy for end users. Thanks -Thejaka On Mon, Nov 24, 2014 at 12:49 PM, Nipurn Doshi nido...@umail.iu.edu wrote: Hi, Laravel-PGA setup - 1) Make sure the php version

Re: 0.14 Release Dates

2014-11-12 Thread Amila Jayasekara
Will be great if we can have unit tests developed for all the features. Also Jenkins is disable for long time i guess ( https://builds.apache.org/job/Apache%20Airavata/). Should bring up this with latest git code. I talked about this in an earlier mail also, but seems no one is interested in

Re: Separate Thrift services- Code restructure

2014-11-05 Thread Amila Jayasekara
Swiftly went through this thread. Seems you are going to merge workflow service and orchestrator (if not ignore my comment). I remember we putting lot of thoughts to fault tolerance aspects of Orchestrator and also workflow interpreter some time back. I do believe merging will effect the FT

Re: Evaluate Suitable Scientific Workflow Language for Airavata.

2014-10-20 Thread Amila Jayasekara
Hello, I am sorry, I am bit late on this thread. But when reading through this thread I simply got lost, what this thread is discussing. I have few questions. 1. @Shameera : Is XWF actually a language to define workflow ? To my understanding it was an intermediate representation to convert

Re: Evaluate Suitable Scientific Workflow Language for Airavata.

2014-10-20 Thread Amila Jayasekara
it. JSON might be a good candidate provided most of the frontends are web based. Thanks -Thejaka On Mon, Oct 20, 2014 at 10:35 PM, Shameera Rathnayaka shameerai...@gmail.com wrote: Hi Amila, Please see my comments inline. On Mon, Oct 20, 2014 at 3:04 PM, Amila Jayasekara thejaka.am...@gmail.com

Re: Notion of user roles in the PHP Reference Gateway

2014-07-01 Thread Amila Jayasekara
, but better to have a separate role. These role will be used for notifying when user experiments go wrong due to infrastructure reasons. Enable/Disable compute resources, applications. A users may be in one or more roles. Suresh On Jun 30, 2014, at 3:53 AM, Amila Jayasekara thejaka.am...@gmail.com

Re: Notion of user roles in the PHP Reference Gateway

2014-07-01 Thread Amila Jayasekara
, 2014 at 1:23 PM, Amila Jayasekara thejaka.am...@gmail.com wrote: Hi Supun, I would expect following; (others please correct me if I am wrong) We need to control access to API functions through roles. Also IS has a notion of permissions and resources. So the resources are mapped to functions

Re: [GSoC] Status Update

2014-06-30 Thread Amila Jayasekara
Hi Supun, Very good progress. Please see some inline comments. On Sun, Jun 29, 2014 at 2:01 PM, Supun Nakandala supun.nakand...@gmail.com wrote: Hi all, Based on the feedback received I extended the proxy user API. The thrift descriptors can be found at [1]. Also I incorporated the proxy

Re: Notion of user roles in the PHP Reference Gateway

2014-06-30 Thread Amila Jayasekara
Hi Supun, I would expect following; (others please correct me if I am wrong) We need to control access to API functions through roles. Also IS has a notion of permissions and resources. So the resources are mapped to functions defined in thrift API. So a permission would look like follows

Apache Jenkins for Airavata

2014-06-30 Thread Amila Jayasekara
Do we have $subject in place ?

Re: ZK work is committed

2014-06-26 Thread Amila Jayasekara
Isnt is possible to start zoo keeper in airavata.sh file (before starting airavata) ? Basically when we do ./airavata.sh it should start ZK in background and start airavata. Thanks Amila On Tue, Jun 24, 2014 at 2:08 PM, Lahiru Gunathilake glah...@gmail.com wrote: Hi Devs, I have committed

Re: ZK work is committed

2014-06-26 Thread Amila Jayasekara
. Suresh On Jun 26, 2014, at 11:17 AM, Lahiru Gunathilake glah...@gmail.com wrote: Yes we can do that. On Thu, Jun 26, 2014 at 11:13 AM, Amila Jayasekara thejaka.am...@gmail.com wrote: Isnt is possible to start zoo keeper in airavata.sh file (before starting airavata

Re: [GSoC] Status Update

2014-06-20 Thread Amila Jayasekara
Nice ! Thanks Amila On Fri, Jun 20, 2014 at 7:16 AM, Supun Nakandala supun.nakand...@gmail.com wrote: Hi All, I have added some php client sample code to the repository [1]. Thank you Supun [1] - https://github.com/scnakandala/airavata-userapi/tree/master/clients/php-client On Wed,

Re: [GSOC] Status update

2014-06-15 Thread Amila Jayasekara
On Fri, Jun 13, 2014 at 8:47 AM, Marlon Pierce marpi...@iu.edu wrote: Thanks, Supun. We may need your additional help with the WS02 identity server as well. More on that later. Marlon On 6/13/14, 12:49 AM, Supun Nakandala wrote: Hi All, So far I have incorporated a php client

Re: [GSOC] Status update

2014-06-15 Thread Amila Jayasekara
at 10:27 PM, Amila Jayasekara thejaka.am...@gmail.com wrote: On Fri, Jun 13, 2014 at 8:47 AM, Marlon Pierce marpi...@iu.edu wrote: Thanks, Supun. We may need your additional help with the WS02 identity server as well. More on that later. Marlon On 6/13/14, 12:49 AM, Supun Nakandala wrote

Re: [GSoC] Identity Server needs for Airavata

2014-03-17 Thread Amila Jayasekara
Hi Suresh, I need to think about this in detail. I will send you a detail reply later. It seems this is going to be an interesting idea. Thanks Amila On Mon, Mar 17, 2014 at 3:51 PM, Suresh Marru sma...@apache.org wrote: Hi All, I would like to brainstorm on this project idea. I know it

Re: Suggestions on maintaining the server/client configuration files?

2014-03-06 Thread Amila Jayasekara
Hi Saminda, I guess the best thing is to create template configuration files in a central location and replace needed variables within the test initialization and place generated config files within the target directory of the test case. E.g :- registry.url = ${registry.url} ${registry.url} is

Re: 0.12 release dependencies

2014-02-28 Thread Amila Jayasekara
I assume that integration tests will be modified according to the new API and they will be fixed. Thanks Amila On Fri, Feb 28, 2014 at 1:29 PM, Marlon Pierce marpi...@iu.edu wrote: Here is a summary of stuff that is needs to be wrapped up before we have a release candidate. I'm posting this

Re: 0.12 release dependencies

2014-02-28 Thread Amila Jayasekara
hands-on. Suresh On Feb 28, 2014, at 1:41 PM, Amila Jayasekara thejaka.am...@gmail.com wrote: I assume that integration tests will be modified according to the new API and they will be fixed. Thanks Amila On Fri, Feb 28, 2014 at 1:29 PM, Marlon Pierce marpi...@iu.edu wrote: Here

Re: Removing current registry and orchestrator services

2014-02-21 Thread Amila Jayasekara
+1 for removing registry service. I can remember registry service leading to a race condition and to avoid that we had to introduce an unnecessary check. More info in [1]. [1] https://issues.apache.org/jira/browse/AIRAVATA-879 Thanks Amila On Fri, Feb 21, 2014 at 3:41 PM, Suresh Marru

Re: Airavata Thrift Module Hierarchy

2014-02-08 Thread Amila Jayasekara
On Fri, Feb 7, 2014 at 8:49 PM, Suresh Marru sma...@apache.org wrote: On Feb 7, 2014, at 2:59 PM, Saminda Wijeratne samin...@gmail.com wrote: I thought all client SDK sources gets auto-generated from the thrift file. Am I missing something here? They are generated but not auto-generated.

Re: Airavata's gsissh tool and Kerberos

2014-02-05 Thread Amila Jayasekara
JSCH provides user authentication mechanism gssapi-with-mic. We should be able to use this interface to implement Kerberos based authentication. In the JCraft library in airvata, we have modified default GSSAPI implementation to incorporate MyProxy (X.509) authentication. We may need to do some

Re: Airavata's gsissh tool and Kerberos

2014-02-05 Thread Amila Jayasekara
On Wed, Feb 5, 2014 at 5:19 PM, Amila Jayasekara thejaka.am...@gmail.comwrote: Yes, it seems. But better to verify. +1 for Kerberos authentication support in GSISSH. Thanks Amila On Wed, Feb 5, 2014 at 5:07 PM, Suresh Marru sma...@apache.org wrote: I did not verify any

Re: [jira] [Created] (AIRAVATA-1000) Road map to Airavata 1.0

2014-01-28 Thread Amila Jayasekara
I think celebrations should happen after counting number of Jira's we have resolve. BTW, 1000 Jiras means 1000 bugs. :-). Bugs will not matter as long as they are taken care of. Thanks Amila On Tue, Jan 28, 2014 at 3:34 PM, Saminda Wijeratne samin...@gmail.comwrote: Nice one Suresh for the

Re: [VOTE] Convert from SVN to GIT

2014-01-21 Thread Amila Jayasekara
+1. Thanks Amila On Tue, Jan 21, 2014 at 10:08 AM, Marlon Pierce marpi...@iu.edu wrote: This is the [VOTE] thread for changing Airavata's version control system from SVN to Git. See [1] for background. Please vote as follows: +1 if you are in favor of changing from SVN to GIT +/- 0 if

Re: Commit messages, Jira, and version control

2014-01-21 Thread Amila Jayasekara
and discussion thread. Please vote only on the [VOTE] thread so that it will be easy to count. All opinions are welcome. Marlon On 1/16/14 10:51 PM, Amila Jayasekara wrote: +1 to move to Git. It seems it is easy for people to contribute with GIT. (Specially situations like GSOC

Re: Orchestrator Overview Meeting Summary

2014-01-17 Thread Amila Jayasekara
the other variables constant( inputs changes are also allowed). As an example: if a job keeps failing on one host, the user should be allowed to submit the job to another host. We should come up with a different name for the scenario.. On Thu, Jan 16, 2014 at 11:36 PM, Amila Jayasekara thejaka.am

Re: Orchestration Component implementation review

2014-01-17 Thread Amila Jayasekara
On Fri, Jan 17, 2014 at 10:32 AM, Saminda Wijeratne samin...@gmail.comwrote: Following are few thoughts I had during my review of the component, *Multi-threaded vs single threaded* If we are going to have multi-threaded job submission the implementation should work on handling race

Re: Commit messages, Jira, and version control

2014-01-16 Thread Amila Jayasekara
+1 to move to Git. It seems it is easy for people to contribute with GIT. (Specially situations like GSOC). Thanks Thejaka Amila On Thu, Jan 16, 2014 at 4:54 PM, Suresh Marru sma...@apache.org wrote: Thanks Marlon for resurrecting this discussion. Its also timely to the transition before

Re: Orchestrator Overview Meeting Summary

2014-01-16 Thread Amila Jayasekara
On Thu, Jan 16, 2014 at 10:58 AM, Sachith Withana swsach...@gmail.comwrote: Hi All, This is the summary of the meeting we had Wednesday( 01/16/14) on the Orchestrator. Orchestrator Overview I Introduced the Orchestrator and I have attached the presentation herewith. Adding Job Cloning

Re: Simple Gateway Developer Guide Code

2014-01-08 Thread Amila Jayasekara
How about having it inside samples and point URL in the wiki ? Thanks Amila On Wed, Jan 8, 2014 at 11:26 AM, Sachith Withana swsach...@gmail.comwrote: Hi all, We are planning to attach the sample code for the Gateway developer guide. There are two suggestions to where to attach the code

Re: Gateway Developer Tutorial

2014-01-06 Thread Amila Jayasekara
, at 12:57 PM, Amila Jayasekara thejaka.am...@gmail.com wrote: I would also suggest to explain the big picture first. i.e. where is the API client and where is the server, where are the resources in a pictorial view. You may also can use sample gateway as a basis for your guide. So that users has

Re: Integration test Jenkins integration

2014-01-02 Thread Amila Jayasekara
? On Thu, Jan 2, 2014 at 3:26 PM, Amila Jayasekara thejaka.am...@gmail.comwrote: Hi Sachith, One way is to pass myproxy credentials as system properties Java VM (i.e. like -Dmyproxy.user=xxx -Dmyproxy.password=). This we have to do in the Jenkins build configurations. Further only admin

[ANNOUNCE] Apache Airavata 0.11 Release

2014-01-01 Thread Amila Jayasekara
The Apache Airavata PMC is pleased to announce the immediate availability of the Airavata 0.11 release. The release can be obtained from the Apache Airavata download page - http://airavata.apache.org/about/downloads.html Release notes are available at -

[RESULT] Re: [VOTE] Apache Airavata Release 0.11 - RC3

2013-12-30 Thread Amila Jayasekara
) +1 Sachith Withana (non-binding) The vote is now closed. I would like to thank everyone who took their time to review the release. Thank you, Regards Thejaka Amila On Mon, Dec 30, 2013 at 12:35 PM, Marlon Pierce marpi...@iu.edu wrote: +1 for release. Marlon On 12/27/13 1:28 PM, Amila

[jira] [Closed] (AIRAVATA-972) Unable to submit jobs to GRID machines

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-972?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-972. - Released on 12/30/2013 Unable to submit jobs to GRID machines

[jira] [Updated] (AIRAVATA-965) Update Airavata JGLOBUS and Unicore jar

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-965?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara updated AIRAVATA-965: -- Fix Version/s: (was: 0.11) 0.12 Update Airavata JGLOBUS

[jira] [Closed] (AIRAVATA-969) GSISSH provider not fail on PBS Syntax errors

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-969?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-969. - Released on 12/30/2013 GSISSH provider not fail on PBS Syntax errors

[jira] [Closed] (AIRAVATA-974) Jars necessary for Credential Store operation is missing

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-974?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-974. - Released on 12/30/2013 Jars necessary for Credential Store operation is missing

[jira] [Closed] (AIRAVATA-941) JCR properties in GFAC's service.properties are obsolete

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-941?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-941. - Released on 12/30/2013 JCR properties in GFAC's service.properties are obsolete

[jira] [Closed] (AIRAVATA-953) Distribute JNLP With Releases

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-953?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-953. - Released on 12/30/2013 Distribute JNLP With Releases

[jira] [Closed] (AIRAVATA-937) Transfer files using GO library

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-937?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-937. - Released on 12/30/2013 Transfer files using GO library

[jira] [Closed] (AIRAVATA-938) Update XBaya window to support file transfer

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-938?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-938. - Released on 12/30/2013 Update XBaya window to support file transfer

[jira] [Closed] (AIRAVATA-925) Display status of experiments upfront in experiments list

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-925?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-925. - Released on 12/30/2013 Display status of experiments upfront in experiments list

[jira] [Closed] (AIRAVATA-954) Evaluating thrift based execution API

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-954?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-954. - Released on 12/30/2013 Evaluating thrift based execution API

[jira] [Closed] (AIRAVATA-952) Add credential store to the Airavata API

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-952?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-952. - Released on 12/30/2013 Add credential store to the Airavata API

[jira] [Closed] (AIRAVATA-966) Update Jglobus version

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-966?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-966. - Released on 12/30/2013 Update Jglobus version

[jira] [Closed] (AIRAVATA-963) Refactoring Integration Tests module to allow easy extendability and remove redundancy

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-963?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-963. - Released on 12/30/2013 Refactoring Integration Tests module to allow easy extendability

[jira] [Closed] (AIRAVATA-936) Authenticate globus online users and retrieve Goauth token

2013-12-30 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-936?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara closed AIRAVATA-936. - Released on 12/30/2013 Authenticate globus online users and retrieve Goauth token

[VOTE] Apache Airavata Release 0.11 - RC3

2013-12-27 Thread Amila Jayasekara
Hi All, Apache Airavata PMC is pleased to call for a vote on the following Apache Airavata 0.11 release candidate artifacts: Detailed change log/release notes: https://svn.apache.org/repos/asf/airavata/tags/airavata-0.11/RELEASE_NOTES All Release Artifacts:

[DISCUSS] Apache Airavata release 0.11 - RC3

2013-12-27 Thread Amila Jayasekara
Hi All, Discussion thread for vote on Apache Airavata 0.11-RC3 release candidate. If you have any questions or feedback or to post results of validating the release, please reply to this thread. Once you verify the release, please post your vote to the VOTE thread. For reference, the Apache

[jira] [Resolved] (AIRAVATA-974) Jars necessary for Credential Store operation is missing

2013-12-26 Thread Amila Jayasekara (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-974?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Amila Jayasekara resolved AIRAVATA-974. --- Resolution: Fixed Fixed in revision 1553472. Jars necessary for Credential Store

Exception when trying to run a job

2013-12-26 Thread Amila Jayasekara
Hi All, Any idea how to resolve following exception ? Thanks Amila DriverClassName=org.apache.derby.jdbc.ClientDriver,Url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata,Username=airavata,Password=airavata,validationQuery=SELECT 1 from

[jira] [Created] (AIRAVATA-975) Wrong exception given when certificate path is configured incorrectly

2013-12-26 Thread Amila Jayasekara (JIRA)
Amila Jayasekara created AIRAVATA-975: - Summary: Wrong exception given when certificate path is configured incorrectly Key: AIRAVATA-975 URL: https://issues.apache.org/jira/browse/AIRAVATA-975

Re: Exception when trying to run a job

2013-12-26 Thread Amila Jayasekara
, 2013 at 6:36 AM, Amila Jayasekara thejaka.am...@gmail.com wrote: Sorry, my bad. Please disregard this question. I didnt specify the certificate path. Sorry for the noise. Thanks Amila On Thu, Dec 26, 2013 at 9:27 AM, Amila Jayasekara thejaka.am...@gmail.com wrote: Hi All, Any idea

Re: [VOTE] Apache Airavata Release 0.11 - RC2

2013-12-26 Thread Amila Jayasekara
I was able to successfully test and validate AIRAVATA-972 in IU network. Therefore both blockers are now resolved. I will proceed with RC3. Thanks Amila On Wed, Dec 25, 2013 at 11:14 PM, Amila Jayasekara thejaka.am...@gmail.comwrote: It is also occurred to me some of the jars necessary

[jira] [Created] (AIRAVATA-976) Same INSTALL, README, NOTICE files are duplicated in many places

2013-12-26 Thread Amila Jayasekara (JIRA)
Amila Jayasekara created AIRAVATA-976: - Summary: Same INSTALL, README, NOTICE files are duplicated in many places Key: AIRAVATA-976 URL: https://issues.apache.org/jira/browse/AIRAVATA-976 Project

[CANCELED] [VOTE] Apache Airavata Release 0.11 - RC2

2013-12-26 Thread Amila Jayasekara
[CANCELED]. On Thu, Dec 26, 2013 at 11:33 AM, Amila Jayasekara thejaka.am...@gmail.comwrote: I was able to successfully test and validate AIRAVATA-972 in IU network. Therefore both blockers are now resolved. I will proceed with RC3. Thanks Amila On Wed, Dec 25, 2013 at 11:14 PM, Amila

Re: [VOTE] Apache Airavata Release 0.11 - RC2

2013-12-25 Thread Amila Jayasekara
, Lahiru Gunathilake wrote: this is due to the home network AFAIK. Lahiru On Tue, Dec 24, 2013 at 10:35 AM, Amila Jayasekara thejaka.am...@gmail.comwrote: On Tue, Dec 24, 2013 at 9:51 AM, Lahiru Gunathilake glah...@gmail.com wrote: Amila, are you getting status 0 message

[jira] [Created] (AIRAVATA-974) Jars necessary for Credential Store operation is missing

2013-12-25 Thread Amila Jayasekara (JIRA)
Amila Jayasekara created AIRAVATA-974: - Summary: Jars necessary for Credential Store operation is missing Key: AIRAVATA-974 URL: https://issues.apache.org/jira/browse/AIRAVATA-974 Project

Re: [VOTE] Apache Airavata Release 0.11 - RC2

2013-12-24 Thread Amila Jayasekara
test with latest checkout. Thanks Amila On Mon, Dec 23, 2013 at 7:43 PM, Amila Jayasekara thejaka.am...@gmail.comwrote: https://issues.apache.org/jira/browse/AIRAVATA-972 Thanks Amila On Mon, Dec 23, 2013 at 4:01 PM, Amila Jayasekara thejaka.am...@gmail.com wrote: I just tried 0.9

Re: [VOTE] Apache Airavata Release 0.11 - RC2

2013-12-24 Thread Amila Jayasekara
JobID= https://trestles-login2.sdsc.edu:58770/16362044103641775176/9412551328091086267/ [INFO] GFac event of type GramJobIDEvent received. On Mon, Dec 23, 2013 at 1:00 PM, Amila Jayasekara thejaka.am...@gmail.com wrote: This could be due to 2 reasons. 1. Your my proxy credentials

Re: [VOTE] Apache Airavata Release 0.11 - RC2

2013-12-23 Thread Amila Jayasekara
, Dec 23, 2013 at 3:49 PM, Chathuri Wimalasena kamalas...@gmail.comwrote: I'm also getting the same issue that Lahiru mentioned with latest certificates when submitting a job in trestles. Reards, Chathuri On Mon, Dec 23, 2013 at 1:00 PM, Amila Jayasekara thejaka.am...@gmail.com wrote

[jira] [Created] (AIRAVATA-972) Unable to submit jobs to GRID machines

2013-12-23 Thread Amila Jayasekara (JIRA)
Amila Jayasekara created AIRAVATA-972: - Summary: Unable to submit jobs to GRID machines Key: AIRAVATA-972 URL: https://issues.apache.org/jira/browse/AIRAVATA-972 Project: Airavata Issue

Re: [VOTE] Apache Airavata Release 0.11 - RC2

2013-12-23 Thread Amila Jayasekara
https://issues.apache.org/jira/browse/AIRAVATA-972 Thanks Amila On Mon, Dec 23, 2013 at 4:01 PM, Amila Jayasekara thejaka.am...@gmail.comwrote: I just tried 0.9 distribution and was able to successfully submit jobs to trestles. So it seems, cause has nothing to do with resource (SHA2

Re: [DISCUSS] Apache Airavata release 0.11 - RC2

2013-12-22 Thread Amila Jayasekara
I also tested tutorials with actual grid jobs. I do not think memory issue is a blocking as we can increase memory. I also found that some of the meta files (NOTICE, README etc ... ) are not up to date with the current release. Intact some of the files were not change since 0.7 release. (Mainly

Cannot access previous releases

2013-12-21 Thread Amila Jayasekara
$subject. E.g :- Try - http://www.apache.org/dyn/closer.cgi/airavata/0.9/airavata-0.9-source-release.zip Same applies for all previous releases. How to fix this ? Thanks Amila

Re: [DISCUSS] Apache Airavata 0.11 RC1 release

2013-12-18 Thread Amila Jayasekara
On Wed, Dec 18, 2013 at 9:58 AM, Marlon Pierce marpi...@iu.edu wrote: Since it is is a problem in 0.10 also (and maybe earlier), I suggest declaring it a known issue rather than a blocker. It could be tricky to debug this one, but we should try to fix in 0.12. Just my thoughts... +1,

Re: [DISCUSS] Release Methodology

2013-12-16 Thread Amila Jayasekara
Hi Suresh, I have some comments inline. On Mon, Dec 16, 2013 at 10:53 AM, Suresh Marru sma...@apache.org wrote: Hi All, This is a very good question. Lets discuss these options so we are consistent across releases. If we look at the way we are doing releases, we are calling a feature

Re: [DISCUSS] Release Methodology

2013-12-16 Thread Amila Jayasekara
, Dec 16, 2013 at 9:28 AM, Suresh Marru sma...@apache.org wrote: Thanks Amila for weighing in. Comments inline: On Dec 16, 2013, at 11:29 AM, Amila Jayasekara thejaka.am...@gmail.com wrote: Hi Suresh, I have some comments inline. On Mon, Dec 16, 2013 at 10:53 AM, Suresh

Re: Integration Test Wiki

2013-12-16 Thread Amila Jayasekara
Hi Sachith, I am not sure what is expected from the page you mentioned. But I have some idea what needs to be done. Let me explain briefly what I have in mind. We need to come up with an integration test for each feature we publish (We may not able to cover everything but needs to do as much as

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