Re: [External] [DISCUSS] New name for MFT

How about a ship theme? Here’s a list of types of ships: https://en.wikipedia.org/wiki/List_of_ship_types. A couple of ancient types of ships: Kerkouros, Corbita. Marlon From: Suresh Marru Date: Monday, January 30, 2023 at 5:59 PM To: Airavata Dev Subject: [External] [DISCUSS] New name for M

Re: [External] Regarding Airavata Seagrid Rich Client

Hi Aishwarya, sorry for late reply, but this is really nice progress. Marlon From: Aishwarya Sinhasane Date: Tuesday, June 21, 2022 at 9:21 PM To: dev@airavata.apache.org Subject: [External] Regarding Airavata Seagrid Rich Client This message was sent from a non-IU address. Please exercise cau

Re: [External] github PRs for lib upgrades

Hi PJ, thanks for the nudge, we will review. Marlon From: PJ Fanning Date: Tuesday, April 5, 2022 at 7:11 AM To: dev@airavata.apache.org Subject: [External] github PRs for lib upgrades [You don't often get email from fannin...@apache.org. Learn why this is important at http://aka.ms/LearnAbo

Re: [External] Data Catalog into its own repo

, Pierce, Marlon wrote: +1 for this refactoring. On 11/9/20, 9:47 AM, "Pamidighantam, Sudhakar" wrote: This message was sent from a non-IU address. Please exercise caution when clicking links or opening attachments from external sources. --- +2. Thanks, Sudhakar.

Re: [External] Re: Data Catalog into its own repo

+1 for this refactoring. On 11/9/20, 9:47 AM, "Pamidighantam, Sudhakar" wrote: This message was sent from a non-IU address. Please exercise caution when clicking links or opening attachments from external sources. --- +2. Thanks, Sudhakar. On 11/9/20, 9:37 AM,

Re: [External] Re: Project Update and Questions

Hi Nick, One specific observation about this particular client: the uploaded KML file needs to have a URL that can be consumed by your mapping API—it needs to have a URL. Also, you need to watch out for caching when displaying the file—if a user uploads a new version of the file with the sam

Re: [External] Project Update and Questions

Hi Nick, Based on off-list feedback, I suggest you verify that the KML sources used in GeoGateway will work with Leaflet.  Give this part a chance to fail fast. Someone else will need to weigh in your third bullet, and your fourth bullet may need more details. Marlon From: "M

Gateways 2020 Call for Participation

Hi all, See below for the Gateways 2020 call for participation. This is a great venue for publicizing your work building science gateways and developing science gateway software. Thanks, Marlon -- Call for Participation: Gateways 2020 (October 19–21, Bethesda,

Gateways 2020 Call for Participation (Tutorials deadline extended to May 5)

Hi all, Please see the announcement below. If you are developing a science gateway, please consider submitting a paper, tutorial, or poster. Thanks, Marlon --- Call for Participation: Gateways 2020 (October 19–21, Bethesda, Maryland) is now accepting submissions. What

FW: [External] Today's webinar—Building Gateways with Apache Airavata Software & SciGaP

Hi all, If you are interested, we have an Apache Airavata webinar today at 1 pm US ET. This will be recorded if you want to watch later. Thanks, Marlon Building Science Gateways with Apache Airavata Software and SciGaP Platform Services Presented by Marlon Pierce, Director, Cybe

Apache Airavata developer position

Hi all, We have an open position in the Science Gateways Research Center at Indiana University for Airavata developers, solution experts, and frontend developers for Airavata using Django (https://github.com/apache/airavata-django-portal). If you are interested, please see https://iujobs

Re: [VOTE] Apache Airavata release 0.17 - RC1

+1 From: "dimuthu.upeks...@gmail.com" Reply-To: dev Date: Thursday, March 21, 2019 at 9:33 AM To: dev Subject: Re: [VOTE] Apache Airavata release 0.17 - RC1 +1 On Thu, Mar 21, 2019 at 1:07 AM Suresh Marru wrote: Apache Airavata PMC is pleased to call for a vote on the following Apa

Re: [DISCUSS] Apache Airavata release 0.17 - RC1

I verified the release signatures and built the code on Mac OSX 10.14.x with Java 1.8 and Maven 3.6, so I’m +1 for the release, voted on the [VOTE) thread. Marlon From: "dimuthu.upeks...@gmail.com" Reply-To: dev Date: Thursday, March 21, 2019 at 1:55 AM To: dev Subject: Re: [DISCUSS]

Gateways 2019 Call for Participation

HI all Please see the Gateways 2019 conference call for participation below. Thanks, Marlon === GATEWAYS 2019 Call for Participation September 23–25, 2019 San Diego, California http://sciencegateways.org/gateways2019/call We welcome submission

Re: Need to contribute to Airavata

Hi Asanka, you need to make a pull request. Marlon On 2/21/19, 1:38 PM, "Asanka Sanjaya" wrote: Hi Suresh, Could you please add me as a developer to the airavata-custos repository ( https://github.com/apache/airavata-custos)? I have created a project with the profile serv

Re: Metascheduler work

Hi Dimuthu, This is something we should re-evaluate. Mangirish Wangle looked at Mesos integration with Airavata back in 2016, but he ultimately ran into many difficulties, including getting MPI jobs to work, if I recall correctly. Marlon From: "dimuthu.upeks...@gmail.com" Reply-To

Re: Unused modules

Can you move these to an “archive” directory or make an “archive” branch?  It may be useful to easily find these for future reference. Marlon From: "dimuthu.upeks...@gmail.com" Reply-To: dev Date: Friday, November 30, 2018 at 8:29 AM To: dev Subject: Re: Unused modules Hi Suresh,

Apache Airavata developer position

Hi all, We have positions open for Apache Airavata developers, solution experts, and integrators open at the Science Gateways Research Center at Indiana University. Our generic position announcement is here: https://iujobs.peopleadmin.com/postings/67282. We are looking for people with a wid

FW: [WSSSPE] BSSw Fellowship open for applications

Possibly of interest. Marlon On 9/10/18, 10:26 AM, "WSSSPE on behalf of David E. Bernholdt" wrote: Dear Colleague, We would like to draw your attention to the Better Scientific Software (BSSw) Fellowship program, the main goal of which is to foster and promote practices

Gateways 2018 Conference Information

Hi all-- Please see below for information on Gateways 2018, including discounts for early registration.  Note also there is still time to submit a poster. Thanks, Marlon -- GATEWAYS 2018 Tuesday through Thursday, September 25–27, 2018 Hosted at t

Re: [GSoC] Re-architect Output Data Parsing into Airavata core

Yes, +1 on the detailed email summaries. Marlon From: Suresh Marru Reply-To: "dev@airavata.apache.org" Date: Friday, June 22, 2018 at 8:46 AM To: Airavata Dev Cc: Supun Nakandala Subject: Re: [GSoC] Re-architect Output Data Parsing into Airavata core Hi Lahiru, Thank you for

FW: [ctsc-announce-l] Trusted CI Webinar May 21st at 11am ET: The EU General Data Protection Regulation (GDPR)

Hi all, I want to draw your attention to this seminar. Marlon From: "Dopheide, Jeannette M" Reply-To: "ctsc-announc...@list.iu.edu" Date: Monday, May 7, 2018 at 9:04 AM To: "announceme...@trustedci.org" Subject: [ctsc-announce-l] Trusted CI Webinar May 21st at 11am ET: The EU Gen

FW: Gateways 2018 CFP: Extended to May 16!

, April 30, 2018 at 9:52 AM To: "Pierce, Marlon" Subject: Gateways 2018 CFP: Extended to May 16! Submissions for Gateways 2018 are now due by Weds., May 16 View this email in your browser Forward this email to a friend Gateways 2018 CFP—Deadline Extended to May 16! The deadli

Re: C++ Client SDK with Airavata 0.17

Thanks, Vasanth.  Do you have a proof of concept that demonstrates your solution, or is a pull request appropriate?  Note also I suggest you repost with the content of your google doc in the email message itself for future references. These emails are publically archived and are searchable.

FW: 3/14 Webinar: Sustaining Science Gateways—Finding your "best fit" model

Gateways Community Institute Date: Tuesday, March 13, 2018 at 10:00 AM To: "Pierce, Marlon" Subject: 3/14 Webinar: Sustaining Science Gateways—Finding your "best fit" model "Sustaining Science Gateways" webinar on Weds. 3/14 View this email in your browser

Gateways 2018 Call for Participation

Call for Participation: Gateways 2018 (September 25–27, at the University of Texas at Austin) is now accepting submissions of papers, demos, tutorials, and panels (2–4 pages) on the topic of science or engineering gateways. Gateways are user-friendly interfaces to scientific computing, data

Re: Install all Airavata server components in a single machine

Thanks, Dimuthu, very thorough.  If anyone finds any problems with this, you can leave a comment in the google doc. We should move this to some place like http://airavata.readthedocs.io. Marlon From: "dimuthu.upeks...@gmail.com" Reply-To: "dev@airavata.apache.org" Date: Tuesday,

Re: Airavata unit tests - Mocking

?+1, very good suggestion. Marlon From: Sachin Kariyattin Sent: Tuesday, February 27, 2018 8:09 PM To: dev@airavata.apache.org Subject: Airavata unit tests - Mocking Hello Dev, I see that we don't use mocking in any of the Airavata unit tests. This sometimes

Re: [DISCUSS] SEAGrid Rich Client to Airavata

We have seen the interest. I’m wondering how much work needs to be done to generalize the current SEAGrid desktop tools so that they are easily deployable by new gateway tenants. Marlon From: Suresh Marru Reply-To: "dev@airavata.apache.org" Date: Friday, November 17, 2017 at 4:43 PM To

FW: Weds. 11/8 Webinar: An introduction to usability & user-centered design

incubator boot camps, so I encourage you to attend. Marlon From: Science Gateways Community Institute on behalf of Science Gateways Community Institute Reply-To: Science Gateways Community Institute Date: Tuesday, November 7, 2017 at 10:00 AM To: "Pierce, Marlon" Sub

Re: Linked Container Services for Apache Airavata Components - Phase 2 - Initial Prototype

Lkz1SCf5iB4enAR00Z46JwY9GGkaS2NON [6] https://github.com/apache/airavata-sandbox/tree/master/airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server On Thu, Nov 2, 2017 at 2:52 AM, Pierce, Marlon wrote: Hi Dimuthu, Thanks for sending

Re: Linked Container Services for Apache Airavata Components - Phase 2 - Initial Prototype

Hi Dimuthu, Thanks for sending this very thoughtful document. A couple of comments: * Use of Kafka instead of RabbitMQ is interesting. Can you say more about how this approach can handle Kafka client failures?  For RabbitMQ, for example, there is the simple “Work Queue” approach in which

Re: Linked Container Services for Apache Airavata Components - Phase 1 - Requirement identification

S., Yodage, S., Doshi, N., Abeysinghe, E., Kankanamalage, C.P., Marru, S. and Pierce, M., 2016, July. Anatomy of the SEAGrid Science Gateway. In Proceedings of the XSEDE16 Conference on Diversity, Big Data, and Science at Scale (p. 40). ACM. Pierce, Marlon E., Suresh Marru, Lahiru Gunathilak

Re: Lecture Slides-Fall 2017

Thanks for catching this. I updated.  The slides are in the website git repo, and the website should be up dated soon (automatically). Here’s the repo URL: https://github.com/airavata-courses/airavata-courses.github.io/tree/master/slides Marlon From: Vasanth Methkupalli Reply-To:

Re: Running PGA locally on OS X

Check permissions and make sure you know who the user is.  You can always (ahem) chmod -R 777 to see if this solves the issue. Marlon From: Neeraj Lad Reply-To: "dev@airavata.apache.org" Date: Wednesday, October 4, 2017 at 10:56 AM To: "dev@airavata.apache.org" Subject: Re: Running PGA

FW: Gateways 2017: Early-bird rates until Sept. 1; register by Th., Oct. 12

Reply-To: Science Gateways Community Institute Date: Thursday, August 17, 2017 at 9:29 AM To: "Pierce, Marlon" Subject: Gateways 2017: Early-bird rates until Sept. 1; register by Th., Oct. 12 Registration open; Poster submissions due 9/8; Resource Expo seeking vendors and resource

Re: Using Redis or Zookeeper for Email Monitoring

Agreed. I think some architecture diagrams are in order.  Marlon From: "Shenoy, Gourav Ganesh" Reply-To: "dev@airavata.apache.org" Date: Thursday, July 20, 2017 at 1:35 PM To: "dev@airavata.apache.org" Subject: Re: Using Redis or Zookeeper for Email Monitoring Apoorv, Good thoug

Re: Adios

Thanks, Ajinkya, and good luck.  You are always welcome here on the dev list to share any insights. Marlon From: Ajinkya Dhamnaskar Date: Friday, June 16, 2017 at 2:12 PM To: Airavata Dev Subject: Adios Hello All, I am stepping out of Bloomington. I must take this opportunity

Re: XML tips

Hi Apoorv, how are you using XML, and what do you want to do? Marlon From: Apoorv Palkar Reply-To: "dev@airavata.apache.org" Date: Friday, June 2, 2017 at 10:51 AM To: "dev@airavata.apache.org" Subject: XML tips Hey Dev, I've completed my spouts/bolts for the Storm demo of th

Re: Apache Flink Execution

Thanks, Apoorv.  Note for everyone else: request access if you’d like to leave a comment or make a suggestion. Marlon From: Apoorv Palkar Reply-To: "dev@airavata.apache.org" Date: Wednesday, May 24, 2017 at 11:32 AM To: "dev@airavata.apache.org" Subject: Apache Flink Execution https

Re: Storm Analysis

Thank you, Apoorv, for the Storm and Spark analysis.  Can you move these docs to either the Airavata Confluence Wiki or to Google Docs and post the link?  Marlon From: Apoorv Palkar Reply-To: "dev@airavata.apache.org" Date: Monday, May 22, 2017 at 2:47 PM To: "dev@airavata.apache.org

Re: [VOTE] enables writes to Airavata GitHub mirror

Thanks, Suresh, this looks like a nice summary.  I’m +1 for GitHub for the pros you list below. None of the cons look like blockers. Marlon From: Suresh Marru Reply-To: "dev@airavata.apache.org" Date: Monday, May 22, 2017 at 1:16 PM To: Airavata Dev Subject: [VOTE] enables writes to

Improperly labeling output data staging failures

I’ve noticed jobs failing during the output data staging step that still get marked as “completed” rather than failed.  Failures were most likely caused by SCP timeouts to a very slow host. Looking at the code, outputDataStaging() [1] doesn’t call the checkFailures() [2] method like inputDa

Re: [GSoC] Number of Deliverables

Discussing those better ways on the dev list is also encouraged.  No plans every stay the same. The value of plans is the process of planning, not the plan itself, as someone else has said. Marlon From: Supun Nakandala Reply-To: "dev@airavata.apache.org" Date: Wednesday, March 29, 20

Re: List of Devops Scripts for Apache Airavata

Re: Marcus’s second bullet. Separating these into separate branches puts the burden on using CI/CD. Marlon From: "Christie, Marcus Aaron" Reply-To: "dev@airavata.apache.org" Date: Friday, March 10, 2017 at 11:54 AM To: "dev@airavata.apache.org" , "Shenoy, Gourav Ganesh" Subject: Re:

FW: [sgci-mgmt] Webinar announcement to circulate to XSEDE, Campus Champions, etc.

Hi all, please see the Webinar announcement below.  This is open to anyone who is interested. Marlon -- For circulation: The next SGCI Webinar will take place February 8, 2017, at 1 pm Eastern/10 am Pacific (1 hour). Register: http://sciencegateways.org/upcoming-even

FW: International Workshop on Science Gateways 2017 CFP, Poznan, Poland

Hi all, In case you are interested, here is a science gateways conference coming up. Marlon On 1/20/17, 12:25 PM, "XSEDE User News" wrote: A new message has been posted to XSEDE User News. Categories: Science Gateways, Conferences Start time: 19 Jun, 2017 09:00 CDT

Re: Improving the PGA Install

+1 in general for this “requirement”. I was thinking the same thing. From: "Christie, Marcus Aaron" Reply-To: "dev@airavata.apache.org" Date: Friday, January 6, 2017 at 2:20 PM To: "dev@airavata.apache.org" Subject: Re: Improving the PGA Install Eric, It’s great to have you working

Re: Database Version Control for Airavata

+1 for looking into Liquibase. I’d be interested to hear other opinions. Marlon From: Anuj Bhandar Reply-To: "dev@airavata.apache.org" Date: Friday, December 23, 2016 at 12:55 PM To: "dev@airavata.apache.org" Subject: Database Version Control for Airavata Hello Dev, Merry Christmas !

Science Gateway Sustainability Workshop

Hi all, I want to draw your attention to the opportunity below. This is not directly an Apache Airavata-related workshop, but we will be covering the Apache Way and general best practices for open source project management and governance. Thanks, Marlon The Scienc

Apache Jenkins emails

How about directing the Jenkins messages to the “issues” or another list besides dev@airavata? Marlon smime.p7s Description: S/MIME cryptographic signature

Re: Running MPI jobs on Mesos based clusters

BSD is ok: https://www.apache.org/legal/resolved. From: Mangirish Wagle Reply-To: "dev@airavata.apache.org" Date: Thursday, October 13, 2016 at 12:03 PM To: "dev@airavata.apache.org" Subject: Re: Running MPI jobs on Mesos based clusters Hello Devs, I needed some advice on the license o

Re: Ansible script to deploy Airavata on AWS

Nice, thanks. I hope this makes deployments a lot easier. From: Shameera Rathnayaka Reply-To: "dev@airavata.apache.org" Date: Friday, September 23, 2016 at 10:05 PM To: dev Subject: Re: Ansible script to deploy Airavata on AWS Hi Devs, I moved my local airavata ansible script from

Re: Docker with Airavata

+1, go for it Colin. Marlon On 9/1/16, 11:02 AM, "Suresh Marru" wrote: Hi Colin, That will be a wonderful contribution. I do not think there will be one right way of using docker instead multiple possibilities. It will be great if we can brainstorm on this thread the possibilitie

Apache Airaveata-Related job openings

Hi all, The Indiana University Science Gateway Group has two job opens related to Apache Airavata, one for an experienced java developer and the other for a science gateway consultant. See [1] and [2]. You can contact me by email if you would like more information. Thanks, Marlon Pierce India

Re: python 3 support

Hi Prady, have you gotten errors trying to use it? From: Prady Reply-To: "dev@airavata.apache.org" Date: Wednesday, July 6, 2016 at 11:13 PM To: "dev@airavata.apache.org" Subject: python 3 support Hi Devs, Does the apache thrift support python 3? Thanks Pradyut

Re: [GSoC] Midterm Evaluations

Google doc is ok for now if you don’t have access to the wiki. Don’t let this be a blocker. We can migrate. From: Bikramjeet Singh Reply-To: "dev@airavata.apache.org" Date: Sunday, June 26, 2016 at 1:10 AM To: Airavata Dev Subject: Re: [GSoC] Midterm Evaluations Hi, Do we need to make it on

Re: XBaya UI

To echo Suresh, it is great to see the progress you have made from the screenshots, but you need to share the code. On 6/10/16, 2:12 PM, "Suresh Marru" wrote: >Hi Bikramjeet, > >Very nice. Can you submit a pull request with the code you have written so >far? > >Suresh > >> On Jun 10, 2016, at

Re: Airavata with Ansible

+1, I encourage everyone to try this out. Eric says next step is the PGA. From: Suresh Marru Reply-To: "dev@airavata.apache.org" Date: Friday, June 10, 2016 at 2:14 PM To: Airavata Dev Subject: Re: Airavata with Ansible Hi Eric, This is indeed very exciting to see. Thanks for your contributio

Re: Apache Aurora-Mesos Integration (Job Submission code)

+1 for investigating a native client instead of wrapping the command line. From: Suresh Marru Reply-To: "dev@airavata.apache.org" Date: Tuesday, June 7, 2016 at 4:08 PM To: Airavata Dev Subject: Re: Apache Aurora-Mesos Integration (Job Submission code) Hi Gourav, Very nice. Can you create a J

Re: Git Develop branch for Apache Aurora Integration

Hi Gourav, please share the script on the list and tell us more about what you are doing. From: Gourav Rattihalli Reply-To: "dev@airavata.apache.org" Date: Friday, June 3, 2016 at 5:17 PM To: "dev@airavata.apache.org" Subject: Git Develop branch for Apache Aurora Integration Hi Dev's, I'm dev

Re: "Something went wrong message" during account confirmation on locally installed PGA

g generated from the PGA side. On Fri, Jun 3, 2016 at 4:02 PM, Pierce, Marlon mailto:marpi...@iu.edu>> wrote: Did you find the problem? From: Abhishek Jain mailto:ajai...@binghamton.edu>> Reply-To: "dev@airavata.apache.org<mailto:dev@airavata.apache.org>" mailto:dev@

Re: "Something went wrong message" during account confirmation on locally installed PGA

ly do that. On Friday, June 3, 2016, Pierce, Marlon mailto:marpi...@iu.edu>> wrote: Please be sure to post the problem and solution. Marlon From: Supun Nakandala > Reply-To: "dev@airavata.apache.org" > Date: Friday, June 3, 2016 at 11:23 AM To: dev > Sub

Re: "Something went wrong message" during account confirmation on locally installed PGA

Please be sure to post the problem and solution. Marlon From: Supun Nakandala Reply-To: "dev@airavata.apache.org" Date: Friday, June 3, 2016 at 11:23 AM To: dev Subject: Re: "Something went wrong message" during account confirmation on locally installed PGA Yes that works for me. On Fri, Ju

Re: Airavata 0.16 Release Planning

x2eeUVc32o0ws&s=HXTGQcfXi-0_JFcA-kExFEiEWO-XBIRLvYpHzs7ZFnQ&e=> before requesting feature freeze. Should not take long. Suresh On Mar 28, 2016, at 11:29 AM, Pierce, Marlon mailto:marpi...@iu.edu>> wrote: Do we have any outstanding tasks that need to be wrapped up and committed

Re: Failed Sending Account Confirmation Email after Account Creation with local PGA - WSO2 IS set up

+1, thanks, Jeff! From: Abhishek Jain Reply-To: "dev@airavata.apache.org" Date: Friday, May 27, 2016 at 8:35 PM To: dev Subject: Re: Failed Sending Account Confirmation Email after Account Creation with local PGA - WSO2 IS set up Yes. I think I verified it with my set-up and then added them w

Re: Trying to Set Up Molecular Dynamics Workflow

t;status changed CREATED -> EXECUTING >2016-05-23 11:15:01,095 [pool-8-thread-6] INFO >org.apache.airavata.orchestrator.server.OrchestratorServerHandler - >expId: juhygf_ff4b4196-aaa7-4e05-9dfd-74978e9cfa19, processId: >PROCESS_71118aff-fa37-449f-ae7f-fb170243d0bf :- Process s

Re: Trying to Set Up Molecular Dynamics Workflow

Hi Jeff, What is the script that you are trying to run (see below)? Can you add some debugging messages there? Marlon On 5/23/16, 11:47 AM, "Jeff" wrote: With my >current setup, I can run jobs that do not require external scripts >(e.g., echo ), but when I try to run any kind of script t

Re: java.lang.RuntimeException: Failed to create database connection pool

Pratik, can you confirm that the mysql.jar is correct, uncorrupted, etc? Use jar –tf or a similar command to list the contents. Marlon From: Eroma Abeysinghe Reply-To: "dev@airavata.apache.org" Date: Thursday, May 19, 2016 at 4:51 PM To: "dev@airavata.apache.org" Subject: Re: java.lang.Runti

Re: Problem in running airavata server in demon mode

See what your classpath is. Note we don’t normally test and run on Windows, so you may want to get a linux environment, virtual or otherwise. Marlon From: Ritesh Agarwal Reply-To: "dev@airavata.apache.org" Date: Tuesday, May 17, 2016 at 5:03 PM To: "dev@airavata.apache.org" Subject: Re: Prob

Re: Unable to start Airavata server

Are you following the steps in http://airavata.readthedocs.io/en/latest/? From: Gowtham A R Reply-To: "dev@airavata.apache.org" Date: Friday, May 13, 2016 at 10:13 PM To: "dev@airavata.apache.org" Subject: Unable to start Airavata server Hi All, I am getting the below error while trying to st

Re: Broken link for Build Instruction

Hi Pratek, Thanks for finding that broken link. The full instructions can be found at http://airavata.readthedocs.io/en/latest/, which is for a full production deployment. For simpler testing of just Airavata with embedded DB, see for example https://svn.apache.org/repos/asf/airavata/site/trun

Connection timeout settings

We have an occasional issue of connection timeouts when performing remote SSH operations. This has a potentially bad side effect of successfully launching a large job but not getting back the Job ID. One straightforward fix is to use longer than the default connection timeout in the Jsch clients

Re: Planning for In-Situ Application and Resource Monitoring [GSoC Project]

rious about why these plans were abandoned, or if they were even related to my project. I'd appreciate any comments on the above! Best, Jeff K. On Wed, Apr 27, 2016 at 4:43 PM, Pierce, Marlon mailto:marpi...@iu.edu>> wrote: RabbitMQ has first class support for Python, so that shoul

Re: New version of Xbaya

You may want to look at https://github.com/SciGaP/seagrid-rich-client. This is a specific end application and outside Airavata, but it uses the API. On 4/28/16, 1:32 PM, "Bikramjeet Singh" wrote: >Hi all, >I will be working on developing XBaya which will be portable with latest >airavata se

Re: Planning for In-Situ Application and Resource Monitoring [GSoC Project]

RabbitMQ has first class support for Python, so that should not be a problem. Suresh already included the link. Suresh covered most of the bases already, so I’ll just reiterate that Airavata’s use of AMQP/RabbitMQ and Thrift should make it programming language independent. You can see how well

Re: Design of Mesos/Aurora integration with Airavata on Jetstream

Hi Emre, are you looking at containerizing any of your applications? On 4/27/16, 1:21 PM, "Emre Brookes" wrote: >Pierce, Marlon wrote: >> Thanks, Gourav, this is great. How will the design differ in the two >> cases? >> >> Since installing the applic

Re: Design of Mesos/Aurora integration with Airavata on Jetstream

Thanks, Gourav, this is great. How will the design differ in the two cases? Since installing the applications is not a simple task and there aren’t good docker libraries (for example) for many of them, I would assume that we would have a collection of VMs that have the codes already installed.

Re: Jetstream VM creation through Airavata

Hi Emre, The current case is the first: manage VMs to run jobs for Airavata, coupled with an Apache Mesos-based scheduling of jobs within the VMs. We have a Jetstream VM with the PGA and Airavata installed there also. Marlon On 4/20/16, 6:34 PM, "Emre Brookes" wrote: >Or are you working o

Re: [VOTE] New website and logo

new one and start iterating on the content. Suresh On Apr 7, 2016, at 3:48 PM, Nipurn Doshi mailto:nido...@umail.iu.edu>> wrote: Thanks Marlon. This will help everyone to add their suggestions to the issue. On Apr 7, 2016 2:39 PM, "Pierce, Marlon" mailto:marpi...@iu.edu&g

Re: Website Redesign update

thumb will be only .md files are to be edited. All .html are generated files and should be considered read-only. Suresh On Apr 7, 2016, at 2:39 PM, Pierce, Marlon mailto:marpi...@iu.edu>> wrote: Also, I didn’t see a Jira so I created one, https://issues.apache.org/jira/browse/AIRAVATA

Re: Website Redesign update

update This is an expected warning since the default (and only) branch is asf-site. Git is looking for non existant master branch. Just do a git checkout asf-site and you should be good. Suresh On Apr 7, 2016, at 2:12 PM, Pierce, Marlon mailto:marpi...@iu.edu>> wrote: I am not abl

Re: Website Redesign update

ev@airavata.apache.org>> Subject: Re: Website Redesign update This is an expected warning since the default (and only) branch is asf-site. Git is looking for non existant master branch. Just do a git checkout asf-site and you should be good. Suresh On Apr 7, 2016, at 2:12 PM, Pierce, Mar

Re: Website Redesign update

I am not able to check out: git clone https://git-wip-us.apache.org/repos/asf/airavata-site.git Cloning into 'airavata-site'... remote: Counting objects: 158, done. remote: Compressing objects: 100% (146/146), done. remote: Total 158 (delta 28), reused 104 (delta 9) Receiving objects: 100%

Re: Airavata 0.16 Release Planning

Do we have any outstanding tasks that need to be wrapped up and committed to dev? From: Shameera Rathnayaka mailto:shameerai...@gmail.com>> Reply-To: "dev@airavata.apache.org" mailto:dev@airavata.apache.org>> Date: Monday, March 28, 2016 at 11:20 AM To: Airavata

Re: [GSoC Proposal] In-Situ Simulation Monitoring and Analysis Using Apache Airavata

Agreed, looks good. Please update your submission. From: Suresh Marru mailto:sma...@apache.org>> Reply-To: "dev@airavata.apache.org" mailto:dev@airavata.apache.org>> Date: Friday, March 25, 2016 at 12:32 PM To: Airavata Dev mailto:dev@airavata.apache.org>> Subject:

Re: [ GSOC prosposal ]

Jatin and others: please submit now. On 3/25/16, 8:06 AM, "Jatin Balodhi" wrote: >Hi Marlon, > >I've made changes to my GSOC proposal draft according to your comments. >Can you review it before i submit it to GSOC site . > >Thanks >Jatin

Re: Unable to Start AirAvata Locally

Hi Ang, XBaya support is deprecated in the current version; 0.14 is the last release to support. We are reimplementing the workflow backend services so it would be better to look at the API than the clients. Marlon From: ANG TAN FONG mailto:an...@um.edu.my>> Reply-To: "dev@airavata.apache.org

Re: [GSoC Proposal] Apache Airavata Monitoring Module

Hi Sidd, This is a well written proposal. Some comments: * The monitoring component doesn’t need to directly communicate with GFAC. There can be multiple GFACs, so the original GFAC that submitted the request may no longer be running. Also, other components may want to receive updates, includ

Re: GSoC proposal - Apache Airavata and Jupyter Integration on the Use Case for Molecular Dynamics

I commented on the document. I would like to see more concrete details of how Jupyter and Airavata will interact. See also general emails about describing your risks and risk mitigations, and how you will demonstrate that each 2 week milestone is completed. Marlon From: Ethan Suh mailto:dong

GSOC objectives and milestones

For all students: in your proposals, clearly state how you will demonstrate each 2 week milestone has been completed. How can we objectively review each milestone and conclude that you have accomplished what you wanted to accomplish? Think also of the risks for your proposal as a whole and each

Re: Note to potential GSOC students

Airavata in the title, in the GSOC portal. Please let me know if you can see my draft. Thanks Jatin -- Forwarded message -- From: "Pierce, Marlon" mailto:marpi...@iu.edu>> Date: Thu, Mar 24, 2016 at 6:18 AM -0700 Subject: Re: Note to potential GSOC

GSOC deadline is tomorrow

Proposals are due tomorrow at 19:00 UTC. See https://developers.google.com/open-source/gsoc/timeline. I recommend that you submit 2-3 hours in advance in case there are technical problems with your submission. Marlon

Re: Note to potential GSOC students

ssage Subject:Re: Note to potential GSOC students Date: Wed, 23 Mar 2016 15:36:58 + From: Pierce, Marlon <mailto:marpi...@iu.edu> To: Jatin Balodhi <mailto:mywork.ja...@gmail.com> Hi Jatin, you have not yet started your application to GSOC program, as far as

Re: [GSOC Proposal] Cloud based clusters for Apache Airavata

obs to be submitted to cloud based clusters. Please let me know whether my understanding is correct. Thank you. Best Regards, Mangirish Wagle On Tue, Mar 22, 2016 at 2:28 PM, Pierce, Marlon mailto:marpi...@iu.edu>> wrote: Hi Mangirish, please add your proposal to the GSOC 2016 site.

Re: [GSoC Proposal] - Integrating Resource Information from Apache Mesos with Apache Airavata’s Job Management Modules

docs.google.com/document/d/1qtFvg4-usT4D_1TDNBsQDFQGZIkH99ideYQ1T3HU9nY/edit?usp=sharing The draft is created under the GSoC proposal site under Apache foundation with the same title. Thanks Pankaj On Mon, Mar 21, 2016 at 4:47 PM, Pierce, Marlon mailto:marpi...@iu.edu>> wrote: Hi Pankaj, I have some comment

Note to potential GSOC students

Please make sure you have started the proposal submission process correctly in the GSOC site, https://summerofcode.withgoogle.com/. I see proposal drafts for only about half of those students who have expressed interest. Thanks, Marlon

Re: [GSoC Proposal] - Integrating Resource Information from Apache Mesos with Apache Airavata’s Job Management Modules

e foundation with the same title. Thanks Pankaj On Mon, Mar 21, 2016 at 4:47 PM, Pierce, Marlon mailto:marpi...@iu.edu>> wrote: Hi Pankaj, I have some comments, but it would be easier if you created a proposal draft in the GSOC site. The google doc option for your draft is better than p

Re: [GSOC Proposal] Cloud based clusters for Apache Airavata

Hi Mangirish, please add your proposal to the GSOC 2016 site. From: Mangirish Wagle mailto:vaglomangir...@gmail.com>> Reply-To: "dev@airavata.apache.org" mailto:dev@airavata.apache.org>> Date: Thursday, March 17, 2016 at 3:35 PM To: "dev@airavata.apache.org

Re: GSOC proposal

ello sir, Is it the UI part or the API implementation that needs to be detailed? Thanks On Tuesday, March 22, 2016, Pierce, Marlon mailto:marpi...@iu.edu>> wrote: Hi Bikramjeet, Thanks for your interest. Your current proposal lacks a lot of detail, and I’m concerned if you will be able to

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