Thanks Kos,
Please see
https://issues.apache.org/jira/browse/OODT-759
We will track it there from now on and determine what needs to be done.
On Wed, Oct 8, 2014 at 8:55 PM, Konstantinos Mavrommatis
kmavromma...@celgene.com wrote:
Here is the offending file before escape:
cas:metadata
Hi Kos,
I take you up on your challenge ;) However I don't know if this will fix it.
On Tue, Oct 7, 2014 at 11:31 PM, Konstantinos Mavrommatis
kmavromma...@celgene.com wrote:
valsailfish quant --index
/reference/v1/Homo-sapiens/GRCh37.p12/SailFishIndex --libtype
'T=PE:O=:S=AS' -1 (gunzip -c
@oodt.apache.org
Subject: Re: How to ingest files when metadata contain non standard
characters?
Hi Kos,
I take you up on your challenge ;) However I don't know if this will
fix it.
On Tue, Oct 7, 2014 at 11:31 PM, Konstantinos Mavrommatis
kmavromma...@celgene.commailto:kmavromma
Hi Kos,
Thanks for reply
On Wed, Oct 8, 2014 at 5:16 PM, Konstantinos Mavrommatis
kmavromma...@celgene.com wrote:
I escaped the characters using the CGI::escapeHTML function from the CGI
perl module.
Wow. I am surpised at this one. I wonder if this is a bug which results in
the discrepancy
In addition, if you can get to the bottom of what you think the intended
behaviour is here, please feel free to log a ticket in Jira
https://issues.apache.org/jira/browse/OODT/?selectedTab=com.atlassian.jira.jira-projects-plugin:issues-panel
On Wed, Oct 8, 2014 at 5:59 PM, Lewis John Mcgibbney
...@gmail.com
Reply-To: dev@oodt.apache.org
Date: Thursday, October 9, 2014 at 2:59 AM
To: dev@oodt.apache.org dev@oodt.apache.org
Subject: Re: How to ingest files when metadata contain non standard
characters?
Hi Kos,
Thanks for reply
On Wed, Oct 8, 2014 at 5:16 PM, Konstantinos Mavrommatis
, 2014 11:38 AM
To: dev@oodt.apache.org
Subject: Re: How to ingest files when metadata contain non standard
characters?
cas-metadata should handle this escaping/unescaping in its SerDe
capabilities.
Kostsas, can yo provide the exact file that I can test on and upload it
to JIRA
Date: Thursday, October 9, 2014 at 5:48 AM
To: dev@oodt.apache.org dev@oodt.apache.org
Subject: RE: How to ingest files when metadata contain non standard
characters?
Thanks Chris,
attached is an offending file before escape.
For the record perl module HTML::Entities does provide an escapeHTML
Here is the offending file before escape:
cas:metadata xmlns:cas=http://oodt.jpl.nasa.gov/1.0/cas;
keyval
keyderived_from/key
val/gpfs/celgene/reference/v1/Homo-sapiens/GRCh37.p12/SailFishIndex/val
