Re: [O] org-ref: format full bibliography?

2019-10-18 Thread John Kitchin
If you have a bibtex file open, run M-x org-ref-build-full-bibliography which should make a pdf of the entries. There isn't a super simple way to filter them right now. The way to do that is use org-ref to add the citations you want in an org file, and then run M-x org-ref-extract-bibtex-to-file,

[O] org-ref: format full bibliography?

2019-10-18 Thread Matt Price
I'm successfully using org-ref to create bibliographic entries and citations in my lectures and syllabi, using ox-hugo and org-re-reveal, and of late also citeproc-orgref. It's great. Now I'd like to add a "bibliography' page to my course websites, which provides a long list of works that students

[O] org-ref: conditionally add url to formatted citation

2019-08-30 Thread Matt Price
On Sat, Jan 7, 2017 at 8:23 AM John Kitchin wrote: > > > >> > >> 2. If you click on a citation link, you can select an action to copy the > >> formatted entry for that key. > > > > > > I had trouble with this. I constructed a minimal emacs config: > > > > #+BEGIN_SRC emacs-lisp > > ;;; elpa inter

Re: [O] org-ref question: create a note from a bibliography entry

2019-07-18 Thread Alan Schmitt
On 2019-07-18 15:54, John Kitchin writes: M-x org-ref-open-bibtex-notes should do that when your cursor is in a bibtex entry. Thank you very much, I don't know how I missed it. Best, Alan signature.asc Description: PGP signature

Re: [O] org-ref question: create a note from a bibliography entry

2019-07-18 Thread John Kitchin
M-x org-ref-open-bibtex-notes should do that when your cursor is in a bibtex entry. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.

[O] org-ref question: create a note from a bibliography entry

2019-07-17 Thread Alan Schmitt
Hello, I have a question about org-ref. Is there a way to directly create a note when being inside a bibliography entry? I currently insert a cite link and using it I can create the note, but I would like to skip the "insert a cite link" part. Thanks, Alan signature.asc Description: PGP s

Re: [O] org-ref exports nicely to html but not to odt

2019-01-05 Thread Eric S Fraga
On Saturday, 5 Jan 2019 at 16:59, Uwe Brauer wrote: > Thanks, right now I am struggling to install the pandoc-citeproc > filter. On Debian, it's its own package so easy but I do know that, at least in the past, the version on Debian was quite significantly behind upstream. This may or may not ma

Re: [O] org-ref exports nicely to html but not to odt

2019-01-05 Thread Uwe Brauer
>>> "Eric" == Eric S Fraga writes: > I use the following (attached) script to convert LaTeX files (usually > generated by org) to docx. It sometimes works well, or at least well > enough for my uses. Maybe you can adapt it to your needs. Thanks, right now I am struggling to install th

Re: [O] org-ref exports nicely to html but not to odt

2019-01-05 Thread Eric S Fraga
I use the following (attached) script to convert LaTeX files (usually generated by org) to docx. It sometimes works well, or at least well enough for my uses. Maybe you can adapt it to your needs. -- Eric S Fraga via Emacs 27.0.50, Org release_9.1.14-1035-gfeb442 #!/bin/sh -f BASE=$(basename $1

Re: [O] org-ref exports nicely to html but not to odt

2019-01-05 Thread Uwe Brauer
> I have used pandoc a little a while ago. See > http://kitchingroup.cheme.cmu.edu/blog/2015/01/29/Export-org-mode-to-docx-with-citations-via-pandoc/ > If you search pandoc on my blog you may find some more. Thanks for pointing that out I did visit your blog. The resulting docx does

Re: [O] org-ref exports nicely to html but not to odt

2019-01-04 Thread Uwe Brauer
>>> "Ken" == Ken Mankoff writes: > On 2019-01-04 at 22:37 +0100, Uwe Brauer wrote: >> I exported the org file in question to latex (I could also start >> directly with latex for that matter.) > Yes. >> Could I stick with bibtex? > Yes. No need to use biber + biblatex, you ca

Re: [O] org-ref exports nicely to html but not to odt

2019-01-04 Thread Ken Mankoff
On 2019-01-04 at 22:37 +0100, Uwe Brauer wrote: > I exported the org file in question to latex (I could also start > directly with latex for that matter.) Yes. > Could I stick with bibtex? Yes. No need to use biber + biblatex, you can stick with bibtex. I only run that command because my mas

Re: [O] org-ref exports nicely to html but not to odt

2019-01-04 Thread John Kitchin
I have used pandoc a little a while ago. See http://kitchingroup.cheme.cmu.edu/blog/2015/01/29/Export-org-mode-to-docx-with-citations-via-pandoc/ If you search pandoc on my blog you may find some more. On Fri, Jan 4, 2019 at 5:28 PM Uwe Brauer wrote: > >>> "Ken" == Ken Mankoff writes: > >

Re: [O] org-ref exports nicely to html but not to odt

2019-01-04 Thread Uwe Brauer
>>> "Ken" == Ken Mankoff writes: > On 2019-01-04 at 18:08 +0100, Uwe Brauer wrote: >> When I export it to html, the bibliography comes out nice. When I >> export it to odt, the resulting odt files contains a lot of rubbish. >> >> A kludge is to export it to html and then open it

Re: [O] org-ref exports nicely to html but not to odt

2019-01-04 Thread Ken Mankoff
On 2019-01-04 at 18:08 +0100, Uwe Brauer wrote: > When I export it to html, the bibliography comes out nice. When I > export it to odt, the resulting odt files contains a lot of rubbish. > > A kludge is to export it to html and then open it with LO/OO and copy > it in an empty odt file, but is t

Re: [O] org-ref exports nicely to html but not to odt

2019-01-04 Thread John Kitchin
It is identical to the html output, it just that odt doesn't render the html tags. You can just customize that variable to get rid of the html markers, and then it will look better. I don't know how to get bold/italics in odt though. John --- Professor John Kitchin

Re: [O] org-ref exports nicely to html but not to odt

2019-01-04 Thread Uwe Brauer
>>> "John" == John Kitchin writes: > Export to backends other than LaTeX have pretty limited support. > I assume by a lot of rubbish you mean there is a lot of html markers in > the bibliography. Right. > You can customize how these are formatted to some extent in the > variable:

Re: [O] org-ref exports nicely to html but not to odt

2019-01-04 Thread John Kitchin
Export to backends other than LaTeX have pretty limited support. I assume by a lot of rubbish you mean there is a lot of html markers in the bibliography. You can customize how these are formatted to some extent in the variable: org-ref-bibliography-entry-format This is not a citation preprocess

[O] org-ref exports nicely to html but not to odt

2019-01-04 Thread Uwe Brauer
Hi Please look at the following example #+begin_example * Bibliography citep:tao08:_global bibliographystyle:plain bibliography:test.bib #+end_example When I export it to html, the bibliography comes out nice. When I export it to odt, the resulting odt files contains a lot of rubbish. A kl

[O] org-ref format in html (odt)

2018-12-06 Thread Uwe Brauer
Hi I am using the following function (I think provided generously by John Kitchin) org-ref-get-bibtex-entry-html (key) (defun org-ref-get-bibtex-entry-html (key) "Return an html string for the bibliography entry corresponding to KEY." (let ((output)) (setq output (org-ref-get-bibtex-en

Re: [O] org-ref, html-export, citation links

2018-08-01 Thread Johannes Brauer
I didn’t see this before, too. Now, I tried to create a minimal example showing the described behaviour, but I cannot reproduce it anymore. Now all is correct. Sorry! Johannes Am 01.08.2018 um 13:06 schrieb John Kitchin mailto:jkitc...@andrew.cmu.edu>>: I don't think I have ever seen this, an

Re: [O] org-ref, html-export, citation links

2018-08-01 Thread John Kitchin
I don't think I have ever seen this, and can't think of a reason why it might be occurring. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchi

[O] org-ref, html-export, citation links

2018-07-29 Thread Johannes Brauer
Hi! I have an older Html-file exported from an org-mode file with org-ref citations. All citation links are internal links into the reference section, fine! But if I anew export the org-mode file, now, the generated citation links are external file links to (not existing) files. For example, ci

Re: [O] org-ref, html-export, bibtex url, webpage

2017-09-11 Thread John Kitchin
Maybe it isn't in customization. Try C-h v bibtex-BibTeX-entry-alist bibtex-BibTeX-entry-alist is a variable defined in `bibtex.el'. You have to set it with some elisp code. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Car

Re: [O] org-ref, html-export, bibtex url, webpage

2017-09-11 Thread Johannes Brauer
Thanks, John, for your hint. I am able to find bibtex-biblatex-entry-alist but not the bibtex-BibTeX-entry-alist in the Bibtex customization group. Johannes Am 11.09.2017 um 02:38 schrieb John Kitchin mailto:jkitc...@andrew.cmu.edu>>: I am pretty sure you cannot use entry types that are not def

Re: [O] org-ref, html-export, bibtex url, webpage

2017-09-10 Thread John Kitchin
I am pretty sure you cannot use entry types that are not defined in bibtex-BibTeX-entry-alist or bibtex-biblatex-entry-alist. You can add types to those variables to get them to work. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Enginee

[O] org-ref, html-export, bibtex url, webpage

2017-09-10 Thread Johannes Brauer
Hi! isn’t it allowed to use bibtex entries @url or @webpage? Using one of them the html export complains that the entry is not found, for example: Carro1998 not found in /Users/johannes/Documents/lehre/Informatik/Programmierparadigmen/Vorlesung/referenzen.bib org-ref-get-bibtex-entry-citation:

Re: [O] org-ref + ASME

2017-05-20 Thread John Kitchin
> * How to add ASME? > I want to know if there is a way to add the ASME database to org-ref. > > I found this: https://github.com/jkitchin/org-ref/issues/148 which hints > me in the right direction, but I don't know how to make it work. > > I am trying with this article: > http://biomechanical.as

[O] org-ref + ASME

2017-05-20 Thread edgar
Dear Dr. Kitchin and Org-mode mailing list, I write to you, because I could not find a mailing list for org-ref. Thanks for your time. I am just starting to use org-ref with the hope that my advisor sees the advantages of using Emacs (instead of the proprietary word processors). I'm a fan of

Re: [O] org-ref and the minibuffer

2017-03-14 Thread John Kitchin
You can get that for articles like this: #+BEGIN_SRC emacs-lisp (setf (cdr (assoc "article" (cdr (assoc "text" org-ref-formatted-citation-formats "${title}") #+END_SRC Julian M. Burgos writes: > Dear list, > > It is possible to customize the information shown in the minibuffer when > the c

[O] org-ref and the minibuffer

2017-03-14 Thread Julian M. Burgos
Dear list, It is possible to customize the information shown in the minibuffer when the cursor (or the mouse pointer) is on top of an org-ref bibliography link? The default seems to be a formatted version of the citation, which includes authors (all of them), title, etc. I would like just to see

Re: [O] org-ref glitch with 2 bib files

2017-01-30 Thread John Kitchin
I can confirm this was happening. I am not sure how it broke, but I have pushed a fix that I think fixes it. Alan L Tyree writes: > G'day, > > I have this near the end of my MS: > > bibliography:refs.bib,tyree.bib > > org-ref finds the entries from refs.bib, but not tyree.bib. > > If I reverse th

[O] org-ref glitch with 2 bib files

2017-01-28 Thread Alan L Tyree
G'day, I have this near the end of my MS: bibliography:refs.bib,tyree.bib org-ref finds the entries from refs.bib, but not tyree.bib. If I reverse the two bib file, it finds the ones from tyree.bib, but not from refs.bib. Org mode version 9.0.4 (9.0.4-elpaplus @ /home/alant/.emacs.d/elpa/o

Re: [O] [org-ref] how to tweak display of links and entries

2017-01-12 Thread Christian Wittern
Dear John, This is great. I will tweak this as needed. Thanks a lot, Christian On 01/13/2017 01:04 AM, John Kitchin wrote: #+BEGIN_SRC emacs-lisp (defun format--cjk-authors (orig-fun &rest args) "Format authors my way." (cl-loop for a in (s-split " and " value t) collect

Re: [O] [org-ref] how to tweak display of links and entries

2017-01-12 Thread John Kitchin
Christian Wittern writes: > Dear John, > > Thanks for your answer. > > On 01/11/2017 10:33 PM, John Kitchin wrote: >> >> There is not a way to hook or define a format for this that I know of. >> For helm-bibtex, you might be able to redefine or advise >> bibtex-completion-apa-format-authors to ha

Re: [O] [org-ref] how to tweak display of links and entries

2017-01-11 Thread Christian Wittern
Dear John, Thanks for your answer. On 01/11/2017 10:33 PM, John Kitchin wrote: There is not a way to hook or define a format for this that I know of. For helm-bibtex, you might be able to redefine or advise bibtex-completion-apa-format-authors to handle that. Well, thanks, I'll investigate t

Re: [O] [org-ref] how to tweak display of links and entries

2017-01-11 Thread John Kitchin
Christian Wittern writes: > Hi Org, especially Org-ref users, > > I have seen a number of org-ref related questions here recently, so I guess > it is OK to ask here. > > I am trying to move to a more sophisticated bibliography format involving > some new field types recently added to biblatex.

[O] [org-ref] how to tweak display of links and entries

2017-01-10 Thread Christian Wittern
Hi Org, especially Org-ref users, I have seen a number of org-ref related questions here recently, so I guess it is OK to ask here. I am trying to move to a more sophisticated bibliography format involving some new field types recently added to biblatex. An author field for example can look

Re: [O] org-ref: citation types (insert full citation); bib style; bib scope

2017-01-07 Thread John Kitchin
> >> >> 2. If you click on a citation link, you can select an action to copy the >> formatted entry for that key. > > > I had trouble with this. I constructed a minimal emacs config: > > #+BEGIN_SRC emacs-lisp > ;;; elpa interface > (setq package-archives ()) > (add-to-list 'package-archives '("mar

Re: [O] org-ref: citation types (insert full citation); bib style; bib scope

2017-01-06 Thread Matt Price
Wow, this is pretty awesome, thank you. A couple of notes inline On Fri, Jan 6, 2017 at 3:42 PM, John Kitchin wrote: > > New org-ref update ;) > > I overhauled the formatted citation support in org-ref today. > > Now, you can do the following things: > > 1. from the C-c ] interface (helm-bibtex,

Re: [O] org-ref: citation types (insert full citation); bib style; bib scope

2017-01-06 Thread John Kitchin
New org-ref update ;) I overhauled the formatted citation support in org-ref today. Now, you can do the following things: 1. from the C-c ] interface (helm-bibtex, helm-cite or ivy-cite) you can mark some entries and choose an action that inserts formatted strings. The default backend for this i

Re: [O] org-ref: citation types (insert full citation); bib style; bib scope

2017-01-06 Thread Matt Price
On Fri, Jan 6, 2017 at 10:26 AM, John Kitchin wrote: > > Matt Price writes: > > > After several years, I'm finally trying to move to bibtex from zotero, > > partly because org-zotxt has stopped working for me (both link insertion > > and html export seem at least temporarily broken). > > > > The

Re: [O] org-ref: citation types (insert full citation); bib style; bib scope

2017-01-06 Thread John Kitchin
That is possible. I am out now, but this afternoon I will send another note on how to do it. On Fri, Jan 6, 2017 at 11:05 AM Matt Price wrote: > On Fri, Jan 6, 2017 at 10:26 AM, John Kitchin > wrote: > > > > > Matt Price writes: > > > > > > > After several years, I'm finally trying to move to

Re: [O] org-ref: citation types (insert full citation); bib style; bib scope

2017-01-06 Thread John Kitchin
Matt Price writes: > After several years, I'm finally trying to move to bibtex from zotero, > partly because org-zotxt has stopped working for me (both link insertion > and html export seem at least temporarily broken). > > The UI for org-ref is pretty fantastic, and I love it. I'm having trouble

[O] org-ref: citation types (insert full citation); bib style; bib scope

2017-01-06 Thread Matt Price
After several years, I'm finally trying to move to bibtex from zotero, partly because org-zotxt has stopped working for me (both link insertion and html export seem at least temporarily broken). The UI for org-ref is pretty fantastic, and I love it. I'm having trouble getting the behaviour I want

Re: [O] org-ref file path to pdf

2016-12-13 Thread Georg W. Otto
John Kitchin writes: > I just pushed a feature that might get you back what you want. > > You can now put [[file:%F][%f]] in the org-ref-note-title-format > variable, and it will put (concat org-ref-pdf-directory key ".pdf") in > for %F, and (concat key ".pdf") in for %f. There is unfortunately,

Re: [O] org-ref file path to pdf

2016-12-08 Thread John Kitchin
I just pushed a feature that might get you back what you want. You can now put [[file:%F][%f]] in the org-ref-note-title-format variable, and it will put (concat org-ref-pdf-directory key ".pdf") in for %F, and (concat key ".pdf") in for %f. There is unfortunately, no check if the pdf actually exi

Re: [O] org-ref file path to pdf

2016-12-07 Thread Georg W. Otto
John Kitchin writes: > This doesn't sound like something that should be happening I think. How > current is your org-ref? > > I do not use the notes feature so it does not get tested too often. You > may be able to control the format of the notes created with the variable > org-ref-note-title-for

Re: [O] org-ref file path to pdf

2016-12-07 Thread John Kitchin
This doesn't sound like something that should be happening I think. How current is your org-ref? I do not use the notes feature so it does not get tested too often. You may be able to control the format of the notes created with the variable org-ref-note-title-format if you are using the default n

[O] org-ref file path to pdf

2016-12-06 Thread Georg W. Otto
Dear all, This is probably something that has come up before, but so far I haven't found a solution: My problem concerns automatic file path expansion in my org-ref setting. According to the instructions in https://github.com/jkitchin/org-ref and https://www.reddit.com/r/emacs/comments/4gudyw

Re: [O] org-ref: renaming/moving an entire pdf library according to a bibtex file

2016-09-19 Thread John Kitchin
Martin Leduc writes: > Hi, > > I just discovered org-ref recently and would like to manage my entire > pdf library with it. Basically, my set-up is a folder containing many > scientific papers in pdf, and a bibtex file containing most of the > entries related to these pdfs. > > My bibtex file

Re: [O] org-ref: renaming/moving an entire pdf library according to a bibtex file

2016-09-13 Thread Adam Porter
Martin Leduc writes: > However, is there a way to bypass the download > (because I already have the file) and to directly move/rename the pdf > to the bibtex-pdfs/ folder while validating my bibtex entry (or > creating a new one, does not matter) ? I haven't yet used org-ref myself, but it shoul

[O] org-ref: renaming/moving an entire pdf library according to a bibtex file

2016-09-13 Thread Martin Leduc
Hi, I just discovered org-ref recently and would like to manage my entire pdf library with it. Basically, my set-up is a folder containing many scientific papers in pdf, and a bibtex file containing most of the entries related to these pdfs. My bibtex file is well linked to org-ref and I hav

Re: [O] org-ref bibliography html export & bigblow

2016-08-14 Thread John Kitchin
It sounds like a css to me. On Sunday, August 14, 2016, Johannes Brauer wrote: > In the meantime I figured out that all works fine if the bibliography is a > org-mode level 1 headline: > > * bibliography:referenzen.bib > But if you write > > bibliography:referenzen.bib > > the bibliography is in

Re: [O] org-ref bibliography html export & bigblow

2016-08-14 Thread Johannes Brauer
In the meantime I figured out that all works fine if the bibliography is a org-mode level 1 headline: * bibliography:referenzen.bib But if you write bibliography:referenzen.bib the bibliography is in the html but not displayed Johannes Am 14.08.2016 um 18:43 schrieb John Kitchin mailto:jkitc.

Re: [O] org-ref bibliography html export & bigblow

2016-08-14 Thread John Kitchin
Is the bibliography actually in the html but not displayed in a browser? It is hard to see how a theme would change the link export, although via few it might change what is visible. On Saturday, August 13, 2016, Johannes Brauer wrote: > Hi, > > using org-ref by John Kitchin bibliography html

[O] org-ref bibliography html export & bigblow

2016-08-13 Thread Johannes Brauer
Hi, using org-ref by John Kitchin bibliography html export works fine as long as I don’t activate the org-html-theme bigblow by Fabrice Niessen which I like very much. With this theme the bibliography doesn’t appear in the exported html anymore. Are there any ideas what I could do? Johannes

Re: [O] org-ref: customizing bibtex key names generated by doi-utils

2016-06-23 Thread John Kitchin
You can customize the bibtex keys like this: ;; variables that control bibtex key format for auto-generation ;; I want firstauthor-year-title-words ;; this usually makes a legitimate filename to store pdfs under. (setq bibtex-autokey-year-length 4 bibtex-autokey-name-year-separator "-"

[O] org-ref: customizing bibtex key names generated by doi-utils

2016-06-23 Thread David Dynerman
Hi all, I'm interested in exporting HTML from an org document that contains references managed by org-ref. I'm running into the following problem. I have a reference that doi-utils added with a very long bibtex key: @article{saldin09_struc_isolat_biomol_obtain_from ... When exporting to html,

Re: [O] org-ref breaks org-repair-export-blocks

2016-05-11 Thread John Kitchin
What seems to be happening is those blocks are no longer special block, but instead an export-block. If you change special-block to export block, then it works for me with org-ref loaded. I don't know why (or even how) org-ref would be changing that though. On Wed, May 11, 2016 at 12:26 PM, Juli

[O] org-ref breaks org-repair-export-blocks

2016-05-11 Thread Julien Cubizolles
Consider the following --8<---cut here---start->8--- #+BEGIN_SRC elisp (require 'package) (setq package-archives '(("ELPA" . "http://tromey.com/elpa/";) ("melpa" . "http://melpa.milkbox.net/packages/";) ("gnu" .

[O] org-ref export to html, note field is not shown

2016-04-06 Thread Uwe Brauer
Hi I have an org file with reference controlled by org-ref. The bib entry in the corresponding bib files contains a note field. When exporting the org file to latex, everything is as expected. (I have to run bibtex anyhow). But when I export to html the note field does not appear. Is this a know

Re: [O] org-ref, abstracts

2016-04-04 Thread John Kitchin
I think thats what I mean. org-ref-arxiv hasn't been changed for at least two months I think. and the abstract is listed in the template here: https://github.com/jkitchin/org-ref/blob/2a8635d4662fbe77f43731edeac1b4ec1112d233/org-ref-arxiv.el#L103 Julien Cubizolles writes: > John Kitchin write

Re: [O] org-ref, abstracts

2016-04-04 Thread Julien Cubizolles
John Kitchin writes: > no problem. I am not sure when that happened though ;) Do you mean you didn't add this functionnality recently and it's been here all along ? Julien.

Re: [O] org-ref, abstracts

2016-04-04 Thread John Kitchin
no problem. I am not sure when that happened though ;) Julien Cubizolles writes: > John Kitchin writes: > > >> If the data exists, then arxiv-add-bibtex-entry could probably add the >> abstract if it existed. I am not too familiar with arxiv so I am not >> sure. > > Just noticed that arxiv-get-p

Re: [O] org-ref, abstracts

2016-04-03 Thread Julien Cubizolles
John Kitchin writes: > If the data exists, then arxiv-add-bibtex-entry could probably add the > abstract if it existed. I am not too familiar with arxiv so I am not > sure. Just noticed that arxiv-get-pdf-add-bibtex-entry now includes the abstract. Thanks a lot for implementing it. Julien.

Re: [O] org-ref, abstracts

2016-03-23 Thread John Kitchin
Julien Cubizolles writes: > John Kitchin writes: > >> I am pretty sure the metadata from dx.doi.org doesn't contain any >> abstract information, so there is not a way to put anything useful in >> it. The abstract is often covered by copyright. > > I hadn't thought of that. But for some sources (a

Re: [O] org-ref, abstracts

2016-03-23 Thread Julien Cubizolles
John Kitchin writes: > I am pretty sure the metadata from dx.doi.org doesn't contain any > abstract information, so there is not a way to put anything useful in > it. The abstract is often covered by copyright. I hadn't thought of that. But for some sources (arXiv comes to mind) that could be d

Re: [O] org-ref, abstracts

2016-03-23 Thread John Kitchin
I am pretty sure the metadata from dx.doi.org doesn't contain any abstract information, so there is not a way to put anything useful in it. The abstract is often covered by copyright. You can add your own abstract with bibtex-make-field (C-c C-f) in a bibtex entry, or you can copy the bibtex entrie

Re: [O] org-ref and link to pdf file ?

2016-03-23 Thread Julien Cubizolles
Julien Cubizolles writes: > org-ref makes it very easy to download a pdf paper when creating a new > bibtex entry. However, there is no way that I could find to directly > open the pdf from the bibtex entry. Could org-ref add some custom field > like file={...} created when the pdf file is downlo

[O] org-ref and link to pdf file ?

2016-03-23 Thread Julien Cubizolles
org-ref makes it very easy to download a pdf paper when creating a new bibtex entry. However, there is no way that I could find to directly open the pdf from the bibtex entry. Could org-ref add some custom field like file={...} created when the pdf file is downloaded ? Julien.

[O] org-ref, abstracts

2016-03-23 Thread Julien Cubizolles
I'm starting to use org-ref to manage bibtex file, and it's impressively useful ! However I couldn't find a variable to have the *-add-bibtex-entry create an abstract field in the bibtex entry. Is it possible? If not, I think it would be a useful addition. J. Cubizolles

Re: [O] org-ref

2016-02-16 Thread John Kitchin
ref:fig2,fig3 will export to \ref{fig2,fig3} just fine. The only missing functionality is the tooltip/clickability like on a cite link. Could you add it as an enhancement issue here https://github.com/jkitchin/org-ref/issues/new? It should not be too hard to do it, but it will take some time and t

Re: [O] org-ref

2016-02-16 Thread Doyley, Marvin M.
\ref{fig2,fig3} not legal unless you use crever-ref package On Feb 16, 2016, at 10:48 AM, John Kitchin mailto:jkitc...@andrew.cmu.edu>> wrote: Is \ref{fig2,fig3} legal LaTeX? John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Ca

Re: [O] org-ref

2016-02-16 Thread Doyley, Marvin M.
Thanks On Feb 16, 2016, at 10:48 AM, John Kitchin mailto:jkitc...@andrew.cmu.edu>> wrote: Is \ref{fig2,fig3} legal LaTeX? John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268

Re: [O] org-ref

2016-02-16 Thread John Kitchin
Is \ref{fig2,fig3} legal LaTeX? John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Tue, Feb 16, 2016 at 8:52 AM, Doyl

Re: [O] org-ref no bibliography generated in pdf

2016-02-07 Thread Nick Dokos
Andreas Kiermeier writes: > On 7 February 2016 at 04:38, John Kitchin wrote: > > that is why you don't get bibtex run then ;) try this > (setq org-latex-pdf-process >        '("pdflatex -shell-escape -interaction nonstopmode > -output-directory %o %b" >          "bibtex %b" >

Re: [O] org-ref no bibliography generated in pdf

2016-02-07 Thread John Kitchin
no reason. I do not actually use this code below. I have another function that probably does want texify does ;) maybe some extra stuff like running makeindex, etc Andreas Kiermeier writes: > On 7 February 2016 at 04:38, John Kitchin wrote: > >> that is why you don't get bibtex run then ;) t

Re: [O] org-ref no bibliography generated in pdf

2016-02-07 Thread Andreas Kiermeier
On 7 February 2016 at 04:38, John Kitchin wrote: > that is why you don't get bibtex run then ;) try this > (setq org-latex-pdf-process >'("pdflatex -shell-escape -interaction nonstopmode > -output-directory %o %b" > "bibtex %b" > "pdflatex -shell-escape -interaction nons

Re: [O] org-ref no bibliography generated in pdf

2016-02-06 Thread Nikolai Stenfors
YES, IT WORKS! Thank you, Eric and John! 2016-02-06 19:08 GMT+01:00 John Kitchin : > that is why you don't get bibtex run then ;) try this > (setq org-latex-pdf-process >'("pdflatex -shell-escape -interaction nonstopmode > -output-directory %o %b" > "bibtex %b" > "pdfla

Re: [O] org-ref no bibliography generated in pdf

2016-02-06 Thread John Kitchin
that is why you don't get bibtex run then ;) try this (setq org-latex-pdf-process '("pdflatex -shell-escape -interaction nonstopmode -output-directory %o %b" "bibtex %b" "pdflatex -shell-escape -interaction nonstopmode -output-directory %o %b" "pdflatex -shell-esca

Re: [O] org-ref no bibliography generated in pdf

2016-02-06 Thread Nikolai
Eric S Fraga ucl.ac.uk> writes: > > On Saturday, 6 Feb 2016 at 14:42, Nikolai Stenfors wrote: > > Hi, > > Org-ref appears to be an excellent reference handling tool for org-mode. I > > have followed the installation according to org-ref homepage. > > However, I have problems exporting the org-f

Re: [O] org-ref no bibliography generated in pdf

2016-02-06 Thread John Kitchin
Then Eric is probably right:what is org-latex-to-pdf-process set to? John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] org-ref no bibliography generated in pdf

2016-02-06 Thread Nikolai
John Kitchin gmail.com> writes: > > It could also be you didn't specify a bibliographystyle. > > Try running M-x org-ref on the file. It checks that some things like that are correct. Sometimes it is > helpful to manually build the puff at the command line. Org hides a lot of errors sometimes.

Re: [O] org-ref no bibliography generated in pdf

2016-02-06 Thread John Kitchin
It could also be you didn't specify a bibliographystyle. Try running M-x org-ref on the file. It checks that some things like that are correct. Sometimes it is helpful to manually build the puff at the command line. Org hides a lot of errors sometimes. On February 6, 2016, at 9:23 AM, Eric S Fr

Re: [O] org-ref no bibliography generated in pdf

2016-02-06 Thread Eric S Fraga
On Saturday, 6 Feb 2016 at 14:42, Nikolai Stenfors wrote: > Hi, > Org-ref appears to be an excellent reference handling tool for org-mode. I > have followed the installation according to org-ref homepage. > However, I have problems exporting the org-file to pdf. The generated > intermediate latex-

[O] org-ref no bibliography generated in pdf

2016-02-06 Thread Nikolai Stenfors
Hi, Org-ref appears to be an excellent reference handling tool for org-mode. I have followed the installation according to org-ref homepage. However, I have problems exporting the org-file to pdf. The generated intermediate latex-file appears visually OK. In the pdf, references are shown as [?] and

Re: [O] org-ref-clean-bibtex-entry and UTF-8

2016-01-13 Thread John Kitchin
If you have a pretty recent org-ref, You can set a list of functions for org-ref-clean-bibtex-entry: https://github.com/jkitchin/org-ref/blob/master/org-ref.el#L302 Use this in an init file, and remove the functions you don't want to run. (setq org-ref-clean-bibtex-entry-hook '(orcb-key-comma

[O] org-ref-clean-bibtex-entry and UTF-8

2016-01-13 Thread Julian Burgos
Dear list, I am using org-ref-clean-bibtex-entry to clean up my biblatex file. Among other things, this function detects if there are non-ASCII characters in each bibtex/biblatex entry. My file has many non-ASCII characters that are exported via Latex to pdf with no problems because my setup is

Re: [O] org-ref video

2015-12-24 Thread briangpowell .
I'm absolutely sure that I read it somewhere--its "Lay-Teck"--and again; if you think about it, that's what it ought to be. Hilarious "La" isn't from "Lamport"--very funny though. I agree though, this is up to me to prove; but, don't hold your breath--it may be hard to find--I have books to the c

Re: [O] org-ref video

2015-12-24 Thread Nick Dokos
"briangpowell ." writes: > I believe I read how to correctly pronounce LaTeX as Lay-Teck (and why > its important--to honor the creator of TeX's wishes+intentions, Donald > Knuth) in Leslie Lamport's book onLaTeX--in the preface. The TeX FAQ (http://www.tex.ac.uk/FAQ-latexpronounce.html) contrad

Re: [O] org-ref video

2015-12-23 Thread Marcin Borkowski
On 2015-12-22, at 23:10, briangpowell . wrote: > Small note, feel free to ignore it (one and all); but, "LaTeX" is properly > pronounced: "Lay-Teck"--since its a macro language which "lays on top of > TeX"--the TeX part you pronounced correctly, which is the part that really > matters (Tau-Epsil

Re: [O] org-ref video

2015-12-23 Thread briangpowell .
I believe I read how to correctly pronounce LaTeX as Lay-Teck (and why its important--to honor the creator of TeX's wishes+intentions, Donald Knuth) in Leslie Lamport's book on LaTeX--in the preface. And when you think about it, pronouncing it as "Lay" does make sense "La" only means "the" in some

Re: [O] org-ref video

2015-12-22 Thread Nick Dokos
John Kitchin writes: > Thanks!  > > You might add your interpretation of the pronunciation here:  > http://tex.stackexchange.com/questions/17502/what-is-the-correct-pronunciation-of-tex-and-latex > ;) > > John > The vexing issue of how to pronounce "LaTeX" has reared its ugly head before, e.g i

Re: [O] org-ref video

2015-12-22 Thread John Kitchin
Thanks! You might add your interpretation of the pronunciation here: http://tex.stackexchange.com/questions/17502/what-is-the-correct-pronunciation-of-tex-and-latex ;) John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie M

Re: [O] org-ref video

2015-12-22 Thread briangpowell .
Great vid, as usual; and, thanks for all you do for the Emacs+TeX+OrgMode community. Small note, feel free to ignore it (one and all); but, "LaTeX" is properly pronounced: "Lay-Teck"--since its a macro language which "lays on top of TeX"--the TeX part you pronounced correctly, which is the part th

Re: [O] org-ref video

2015-12-22 Thread John Kitchin
Thanks! B.V. Raghav writes: > Hi, > > I had been following the thread(s) about org-ref by the words, out of > curiosity. However, this video shows how examplary the work is. Awesome > work sir. > > Thanks, > r -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carneg

Re: [O] org-ref video

2015-12-22 Thread B.V. Raghav
Hi, I had been following the thread(s) about org-ref by the words, out of curiosity. However, this video shows how examplary the work is. Awesome work sir. Thanks, r -- (B.V. Raghav)

[O] org-ref video

2015-12-22 Thread John Kitchin
Hi everyone, I made a new video showing some of the new features of the org-ref that is in Melpa: http://kitchingroup.cheme.cmu.edu/blog/2015/12/22/org-ref-is-on-Melpa/ These features are: 1. Drag-n-drop a PDF or url onto a bibtex file to add bibtex entries. This works when org-ref knows how t

Re: [O] org-ref on Melpa finally!

2015-12-17 Thread John Kitchin
citeproc is so experimental right now I don't think it is ready to be part of org-ref in melpa yet. It is in the git repo. If/when it becomes useful to use, we can figure out how to include it. Martin Yrjölä writes: > Hi! > > John Kitchin writes: >> I finally got org-ref up on melpa. If you hav

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