Re: Taking Dot Product of faceGrad

2014-01-27 Thread Jane Hung
Another issue: I tried this Cahn Hilliard example http://pastebin.com/9UZJ2h24 with trilinos instead of pysparse, and the results seem to differ. The phase separation doesn't seem to occur with the trilinos solver. On Fri, Jan 24, 2014 at 7:23 PM, Jane Hung wrote: > Could you give more

Re: Taking Dot Product of faceGrad

2014-01-24 Thread Jane Hung
Wheeler wrote: > On Fri, Jan 24, 2014 at 10:44 AM, Jane Hung wrote: > > Actually I got it working in Ubuntu, but the parallel implementation > doesn't > > give expected results, as in different from running in serial. The > > parallelization setup seems fine from the comman

Re: Taking Dot Product of faceGrad

2014-01-24 Thread Jane Hung
Actually I got it working in Ubuntu, but the parallel implementation doesn't give expected results, as in different from running in serial. The parallelization setup seems fine from the command line test on the site. Do periodic grids work when running in parallel? If not, how could periodic bounda

Re: Taking Dot Product of faceGrad

2014-01-21 Thread Jane Hung
7;s little point in running a simulation under these > conditions. > > On Jan 16, 2014, at 2:21 PM, Jane Hung > wrote: > > > I'm using PySparse > > > > On Jan 15, 2014, at 10:27 PM, Guyer, Jonathan E. Dr. < > jonathan.gu...@nist.gov> wrote: > &g

Re: Taking Dot Product of faceGrad

2014-01-16 Thread Jane Hung
I'm using PySparse On Jan 15, 2014, at 10:27 PM, Guyer, Jonathan E. Dr. < jonathan.gu...@nist.gov> wrote: > On Jan 14, 2014, at 2:05 PM, Jane Hung wrote: > >> The vector formulation is still rather slow (much much slower than with just one equation). Is that expected? &g

Re: Taking Dot Product of faceGrad

2014-01-14 Thread Jane Hung
hether the issues described in that ticket are the source of > what you're seeing, but it can't help. For your problem, you may want to > base what you're doing on the vector formulation in that example. > > On Jan 14, 2014, at 11:31 AM, Jane Hung wrote: > > >

Re: Taking Dot Product of faceGrad

2014-01-14 Thread Jane Hung
can't deal with my more complicated coupled system. Is this expected behavior? Is there any way to speed things up so that my system has a chance of running at all? On Mon, Jan 13, 2014 at 2:11 PM, Jane Hung wrote: > Yes, restricting the time step works. However, whenever I split up t

Re: Taking Dot Product of faceGrad

2014-01-13 Thread Jane Hung
. I happened to see your message at home, so could download the movie independent of the NIST network, but that's not normally true. If you have large files to share with us in the future, let us know and we can provide a place to put them. On Jan 10, 2014, at 11:23 AM, Jane Hung wrote: I tri

Re: Taking Dot Product of faceGrad

2014-01-10 Thread Jane Hung
/nocwmh8x1f5b6rw/1_order_parameter.mp4), the error increases a lot. I'd like to see what happens after more iterations, so is there a way to keep the error small? On Mon, Dec 30, 2013 at 10:50 AM, Daniel Wheeler wrote: > On Sun, Dec 29, 2013 at 6:28 PM, Jane Hung wrote: > > I&

Re: Taking Dot Product of faceGrad

2013-12-29 Thread Jane Hung
;t have an analytical solution. On Sat, Dec 28, 2013 at 4:45 PM, Daniel Wheeler wrote: > On Fri, Dec 20, 2013 at 2:19 PM, Jane Hung wrote: > > Now that I've changed it as you mentioned, it says Can't expand MemType > 0. > > What can I do about this? > > Maybe run

Re: Taking Dot Product of faceGrad

2013-12-20 Thread Jane Hung
Now that I've changed it as you mentioned, it says Can't expand MemType 0. What can I do about this? http://pastebin.com/buFS1NRu On Fri, Dec 20, 2013 at 10:24 AM, Daniel Wheeler wrote: > On Fri, Dec 20, 2013 at 9:13 AM, Jane Hung wrote: > > That definitely helps the simu

Re: Taking Dot Product of faceGrad

2013-12-20 Thread Jane Hung
implementation combining fourth order > diffusion terms and coupled equations can't be trusted. > > -- > Daniel Wheeler > ___ > fipy mailing list > fipy@nist.gov > http://www.ctcms.nist.gov/fipy > [ NIST internal ONLY: https:/

Re: Taking Dot Product of faceGrad

2013-12-18 Thread Jane Hung
ot;. It'll be a "FaceVariable" in its current form. Change > the outermost "faceGrad" to "grad" and things should work. -- > Daniel Wheeler > ___ > fipy mailing list > fipy@nist.gov > http://www.c