Dear FS experts,
I recognized that there is no manual entry for mri_concat and fslcalc.fsl.
Although there is an extensive help text just typing the command
I would find a manual entry (man mri_concat) including exmaples very helpful
(or an entry on the freesurfer command site).
Thanks, Michae
Hi Bruce, Thanks for your attention,
Can you write for me a sample line where I want to compute a 3D volume of
the hippocampal? And I can show it with tksurfer? Thanks
Leonardo
-Messaggio originale-
Da: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Inviato: sabato 12 giugno 2010 20.22
was it the same subject? If not, check for large topological defects,
which are usually the most time consuming part
cheers
Bruce
On Sun, 13 Jun 2010,
Zhangyuanchao wrote:
Hi, expert,
I used freesurfer on a 32bit ubuntu operation system some days ago. For one subject, the
"recon-all -s $f
Hi Leonardo,
you just want to visualize it? Can you explain your goals a bit better?
You could view it in freeview as an isosurface if you wanted. Ruopeng: is
there wiki documentation for this?
cheers
Bruce
On Sun, 13 Jun 2010, Leonardo Chesi wrote:
>
> Hi Bruce, Thanks for your attention,
I located some discussions but could noit figure out how can I obtain
numerical depth values from ?h.sulc files. I need to find the sulcal dept of
certain sulci as defined in aparc.a2009
Thanks in advance
Lena
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Hi bruce,
my goal is to obtain a 3D surface of the hippocampal region for a visual
comparison with a manual segmentation made by a neuroradiologist. Today I
managed to extract the volume with mri_binarize but I can't transform it in
a surface that tkurfer can visualize. For that I try to use mri_vo
Hi Michael,
sorry, a bunch of us have been away in Barcelona with very slow network
access. Did this question get answered? I think Doug has something to do
this (as do I somewhere, but I'm sure Duog's is better :>)
cheers
Bruce
On Mon, 7 Jun
2010, Michael Scheel wrote:
> Dear FS experts,
>
Hi Lena,
the values in sulc are the integrated dot product of the movement vector
with the surface normal, although at the end the global mean is taken out
of it. Will that work for you?
cheers
Bruce
On Sun, 13 Jun 2010, Lena Palaniyappan wrote:
> I located some discussions but could noit fi
vol2surf won't work - that's for scalar maps. You need a tesselation I
guess, which you can generate with mri_tesselate or mri_mc. If it's just
for visualization though you could probably just load it into freeview
and look at it as an isosurface of the volume.
cheers
Bruce
On Sun, 13 Jun 2010,
That should as I am only trying to look at the rank order across two groups
in terms of the 'depth'. How can I obtain these numerical values?
Thanks
Lena
On 13/06/2010 19:28, "Bruce Fischl" wrote:
> Hi Lena,
>
> the values in sulc are the integrated dot product of the movement vector
> with t
Hi Lena,
just use it as you would thickness. Not sure I understand your question.
Are you using qdec?
cheers
Bruce
On Sun, 13 Jun 2010, Lena Palaniyappan wrote:
>
> That should as I am only trying to look at the rank order across two groups
> in terms of the 'depth'. How can I obtain these nume
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