Hi Leonardo, you just want to visualize it? Can you explain your goals a bit better? You could view it in freeview as an isosurface if you wanted. Ruopeng: is there wiki documentation for this?
cheers Bruce On Sun, 13 Jun 2010, Leonardo Chesi wrote: > > Hi Bruce, Thanks for your attention, > Can you write for me a sample line where I want to compute a 3D volume of > the hippocampal? And I can show it with tksurfer? Thanks > Leonardo > > -----Messaggio originale----- > Da: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Inviato: sabato 12 giugno 2010 20.22 > A: Leonardo Chesi > Cc: freesurfer@nmr.mgh.harvard.edu > Oggetto: Re: [Freesurfer] How means all the output file from a segmentation? > > Hi Leonardo, > > the outputs are listed on our wiki. If you want to extract a single > structure you can use mri_binarize using the indices in the > $FREESURFER_HOME/FreeSurferColorLUT.txt file. > > cheers > Bruce > On Sat, 12 Jun 2010, Leonardo > Chesi wrote: > >> Hi, after the segmentation process, we obtain a lots of file that I can't >> understand what they represent. Infact I know the mean of the file > aseg.mgz >> (that is a mask of the segmentation) and norm.mgz but for example I can't >> understand the difference between brainmask.mgz and brainmask_auto.mgz. > Can >> you help me with a list of the output? And can I obtain the volume > rendering >> of only one part of the segmented structure? (es. Hippocampal)?? >> >> Thanks for your help >> >> Leonardo >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
