Hi there,
I have two questions regarding Talairach registration.
_*Question 1:*_
I would like to check Talairach registration according to this page:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach_freeview
I see this line for the tutorial:
freeview -v tal_before/mri/T1.mgz
Hi,
I’m interested in using mris_make_face_parcellation, but I can’t find any
documentation on the input arguments and outputs. Could you give me more
information on this command or direct me to the proper website?
Thanks,
Sophie
--
Sophie Wohltjen
Post-baccalaureate Fellow
Laboratory of Brain
it is hard to say that they are in the same space. To be in the same
space, they have to have the same origin, direction cosines, and voxel
size. Likely your functional results are in MNI152 whereas fsaverage is
in MNI305. There is no such thing as MNI space per se. If this is the
case, I
Hello Experts,
Is there any command that can map both hemispheres of the brain into one
single sphere? It will be equal to combining two inflated hemispheres into
one spherical brain surface that has its own scalar overlays.
Best,
Saeed
___
Freesurfer
Hi Doug,
thanks for the response. The residual from unwhittening data is the same as
those produced by the full model. One more question. I transferred the
functional data from functional space to the anatomical space using mri_vol2vol
without resample: mri_vol2vol --reg register.dof6.dat
No I don't think so,
Sorry
Bruce
On Aug 17, 2015, at 12:45 PM, Saeed Mahdizadeh Bakhshmand
saeedbakhshm...@gmail.com wrote:
Hello Experts,
Is there any command that can map both hemispheres of the brain into one
single sphere? It will be equal to combining two inflated hemispheres
Hi Bahram - Can you please send us your entire trac-all.log file? Thanks!
a.y
On Fri, 14 Aug 2015, B M wrote:
Dear experts,
I have the last version of tTrakula. i did the first step with
trac-all -prep -c bmdaten/Auswertung/ALS-Review/Trakula/dmrirc
This worked properly to the end as shown
sorry, can you include them in a single email. I already deleted your
previous one :)
On 8/17/15 11:30 AM, Elijah Mak wrote:
Hi Douglas,
Sorry about that! I hope this works. I have pasted the earlier correspondence
here with your response below:
Re: [Freesurfer] Extracting MNI
It samples halfway between the white and pial
On 8/13/15 6:52 AM, Silas wrote:
Dear Freesurfer team,
How does mris_preproc map volume data onto the surface when using the
-ivoption? Is an average between the white and pial boundaries taken,
orare only the voxels taken into account that
sorry, what is this in reference too? Please remember to include the
text from previous exchanges so we have context for questions. We answer
a lot of email on freesurfer@... and it is hard to keep track of things.
On 8/14/15 7:00 AM, Elijah Mak wrote:
Hi Douglas,
Thanks for the help!
Hi Douglas,
Sorry about that! I hope this works. I have pasted the earlier
correspondence here with your response below:
Re: [Freesurfer] Extracting MNI Coordinates from the Destrieux Atlas:
Checking steps
They are not the same. As you point out they have a correlation of
.98, not 1.0. What you are discovering is the inconvenient truth that
task signal accounts for a very small proportion of variation. Welcome
to fMRI:). I think the reason why the residual does not equal y - X*beta
is that they
Can you send me the log file from the glmdir folder? The log file that
has perm in the name?
On 8/12/15 11:33 AM, pablo najt wrote:
Will do that from now on. the output is as follow:
This is the output I am getting which I believe is not what I need for
check the permutation output
Hi Janosch - Looking at the stats files of your subjects, just by a quick
count of the number of lines, I see that there are some subjects that have
only 1 time point and some that have multiple time points, and that the
pathstats.byvoxel.txt files have different lengths between those two
Hey Anastasia,
thanks for looking into this.
Am 17.08.2015 um 20:33 schrieb Anastasia Yendiki
ayend...@nmr.mgh.harvard.edu:
Hi Janosch - Looking at the stats files of your subjects, just by a quick
count of the number of lines, I see that there are some subjects that have
only 1 time
I would probably use bbregister to register the volumes, then use
mri_surf2surf with the --reg option to map the surfaces from one space
to another.
On 8/14/15 1:59 PM, Hibert, Matthew Louis wrote:
Hi Bruce,
My goal is to compare the surfaces and segmentations from the reconstructions
of
On 8/14/15 10:15 AM, chenhf_uestc wrote:
Dear freesurfer experts,
The freesurfer online manual stated that before group analysis, we
should*resample data* onto the*common space (fsaverage)*. I have three
questions here. First, Is the fsaverage file in the MNI space?
There is no such thing as
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