Hi list,I have two concerns, please:1) It is possible to apply FDR correction
on rs-fMRI seed based analysis by FS-FAST? If yes, I can I do it?2) I have
apply the FS guidelines and I have used Montecarlo correction with threshold at
1.3 but in the within group analysis the clusters are very larg
Hi Fengji
we are looking into it and will hopefully have an answer in the next day
or so
cheers
Bruce
On Mon, 7 Dec 2015, Fengji Geng wrote:
Hi Bruce,
Thank you for your response on my question.
I am also wondering how long it would take to fix the bug. As we are looking
forwarding to us
Hi again,
Just following up with my last email. Also, is it more accurate to compare the
gray-white contrast on both hemispheres in the same ROI than to compare white
matter intensity only?
Thanks,
Sabrina
On Fri, Dec 4, 2015 at 10:53 AM -0800, "Sabrina Yu"
mailto:sabrina@ucalgary.ca>>
On 12/07/2015 08:35 AM, std...@virgilio.it wrote:
> Hi list,
> I have two concerns, please:
> 1) It is possible to apply FDR correction on rs-fMRI seed based
> analysis by FS-FAST? If yes, I can I do it?
try this binary
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_fdr
> 2) I
can you send me
/Users/marc/Desktop/brainscan/DICOM/PA00/ST00/SE01/IM00
? Also, what version of FS are you using?
On 12/05/2015 01:39 PM, Marc Callison wrote:
> Yes I don't think that is it because it processes some of the files.
> Not sure though.
>
> I did try the mri_convert
On 12/04/2015 01:53 PM, Sabrina Yu wrote:
> Thanks Doug, those are calculated by pctsurfcon correct?
yes
>
> Is there also a way to separately measure white matter intensity, not
> a gray-white contrast?
You can re-run pctsurfcon specifying the tmp dir. When you do this it
will not delete the t
Can you send me one of the e0070_CC12_new.aseg.stats files?
On 12/06/2015 08:12 AM, UQAM wrote:
> Hi Bruce,
>
> We used these:
>
> mri_cc_new -aseg aseg.auto_noCCseg.mgz -o aseg.12segmentsCC_new.mgz -d
> 12 e0070
> ... (for all the subjects from e0042 to a0040)
>
> mri_segstats --seg $SUBJECTS_DI
For those who do not know, Apple's latest release of OSX 10.11 (El
Capitan) implements SIP (https://support.apple.com/en-us/HT204899), a sort
of security protection technology, that unfortunately breaks the way
freesurfer passes library paths.
We are currently making changes to the code so that f
Not sure. Can you run this command
cd /home/quadrellis/civ_ptsd/structural_fs/C02DL_t1/label
mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b
-a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab C02DL_t1 rh white
and send the terminal output. Does it not fail for th
Hi Scott,
hmmm, I know it says "exited with ERRORS", but I don't actually see any
errors. Did it appear to finish properly? Are the results visually ok?
ZBruce
On
Tue, 8 Dec 2015, Scott Quadrelli wrote:
Hi All,
I am trying to track down the source of an error on one of my first runs usi
Hi Doug,
See attached an example of an aseg.stats file for subject e0070 (
e0070_CC12_new.aseg.stats)
Regards,
Genevieve
On Mon, Dec 7, 2015 at 7:48 PM, Douglas N Greve
wrote:
> Can you send me one of the e0070_CC12_new.aseg.stats files?
>
> On 12/06/2015 08:12 AM, UQAM wrote:
> > Hi Bruce,
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