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Hi
I am working in Freesurfer for subcortical segmentation of brain, I did
segmentation of a volume and I got around 45 regions. Is it possible that I
could customize the regions I want or number of segments that I want?
Thank You
Regards
*Fariha
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Sorry I'm coming to this a bit late I'm not sure that the CUDA
implementation is supported these days. I've not done much work on em_
and ca_register since 2012; I'm not sure about the surface stream (I
didn't do that port). Furthermore, I don't
Hi Emanuel,
can you include the full command line and output?
cheers
Bruce
On Wed, 12 Dec 2018,
Emanuel Alvaredo wrote:
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Thanks for your answer Douglas. I replaced the make_average_surface file with
the new one but I
have the same message
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After using MRIread from Matlab in file gamma.mgh, I obtain the following:
mri =
struct with fields:
srcbext: ''
analyzehdr: []
bhdr: []
vol: []
fspec: 'gamma.mgh'
pwd:
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Associate Professor, Behavioral Neuroscience
University of Delaware: College of Arts & Sciences: Psychological & Brain
Sciences
Location: Newark, DE
The University of Delaware invites applications for a tenured associate
professor (or assistant
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Thanks for your answer Douglas. I replaced the make_average_surface file
with the new one but I have the same message error.
ASeg Vox2RAS: ---
-1.0 0.0 0.0 128.0;
0.0 0.0 1.0 -128.0;
0.0
p.s. if you look in the recon-all.log you will see:
totalusedfree shared buff/cache
available
Mem:4025436 1115872 794808 54712 2114756
2510316
Swap: 0 0 0
which looks like something else was
Hi Liangjun.
usually that means you ran out of RAM.
cheers
Bruce
On Thu, 13 Dec 2018, 张亮军 wrote:
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Hello FreeSurfer Developers,
I'm attempting to use "recon-all -i T1.nii.gz -s zhang -all", but there is a
ERROR:
saving intensity scales to
Hi, I am interested in using the beta series method
(https://neuroscape.ucsf.edu/wp-content/uploads/publications/Rissman2004-Measuring-functional-connectivity-during-distinct-stages-of-a-cognitive-task.pdf)
for intra-subject analysis. Is there a straightforward way to do this in
FreeSurfer?
I
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Hello!
I tried to download the Matlab runtime for Linux to use FSFAST but the link
is broken.
https://surfer.nmr.mgh.harvard.edu/pub/dist/mcr/MCRv83_linux.tar.gz
Not Found
The requested URL /pub/dist/mcr/MCRv83_linux.tar.gz was not found on this
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Hi Bruce,
Already sent:
ftp> put 013.tar.gz
local: 013.tar.gz remote: 013.tar.gz
200 PORT command successful. Consider using PASV.
150 Ok to send data.
226 Transfer complete.
223104380 bytes sent in 808.49 secs (269.4852 kB/s)
ftp>
On Wed, Dec 12,
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Hi Bruce,
Thank you for your reply.
I am sending now a file called 013.tar.gz via ftp. And this is not the
worst...there are other with more regions that have not been considered in
the segmentation process. I would like to know how could I cope with
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Dear Douglas,
Is it possible to use mri_gtmpvc command in order to intensity normalize
PET images without applying PVE correction by setting --psf to 0 ?
Best,
Matthieu
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Dear Freesurfer's experts,
In order to have a robust PET signal projection, is it possible compute the
projected PET signal as a weighted average of the PET signal intersecting
with the surfaces ranging from 35 to 65% of the cortical tickness with a
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Hi Douglas,
Could you help me about my previous mail with questions ?
Thanks,
Matthieu
Le ven. 7 déc. 2018 à 14:31, Matthieu Vanhoutte
a écrit :
> Hi Douglas,
>
> Thanks for these clarifications. I added some others questions inline
> below.
>
>
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