[Freesurfer] response?? Fail to install FreeSurfer 7 from the *.deb package

External Email - Use Caution Hi R, Thank you for your kind help. I re-downloaded the package and the installation was finished with error. Best, Qunjun   --  -- ??:

[Freesurfer] Glasser parcellation labelling

Hello, I have yet another, likely obvious, question and I apologize if this is answered elsewhere. I ran the below series of functions to apply the HCP-MM1 (Glasser) atlas to the FreeSurfer output. I was able to produce an annotation file that had the labels in the right locations and mapping.

Re: [Freesurfer] Thalamic segmentation error

External Email - Use Caution Thank you Eugenio and R. It works great. On Wed, Oct 19, 2022 at 4:04 PM fsbuild wrote: > > You shouldn’t be getting errors about libcuda (which we do not support). > > If you have not already done so, please try the script we provide to > install th

[Freesurfer] Preproc-sess crashed - 3dvolreg.afni error

External Email - Use Caution Hello FreeSurfer Developers, I downloaded Freesurfer v7.3.2

[Freesurfer] MRI recon-all failed at talairach

External Email - Use Caution Dear FreeSurfer Developers, I am encountering a weird error in performing recon-all in my dicom directory. I believe the problem is here (snippet copied from talairach_avi.log. I have also attached here the recon-all.log, as well as the talaraich_av

Re: [Freesurfer] help

Hi Sarah Sorry, I’m not sure we have much to add. We don’t flatten much any longer, and the cuts are kind of ad hoc – the one around the medial wall to get rid of non-cortical stuff, then the radial ones from there to remove particularly the curvature from the 3 poles. Mostly we just follow wha

[Freesurfer] help

External Email - Use Caution Dear freesurfer, Are there any additional resources on how to make cuts? I have found this https://secure-web.cisco.com/18_liDyv7h8S0t-GuSrqbS0mexl0ornQBxqLR6v5JlLJUxICtX_m72JgFOKgqmcmDmNUv_rPvux5Bj3HvJdGS1wmDMB49Af-BJx9Q5hozmhhuUcgnG8xeUpfoO4g2LSz1OdF