[Freesurfer] freesurfer as module

2024-07-01 Thread Dong, Yilei
External Email - Use Caution Hi Freesurfer Developers, If Freesurfer is available as a module on a computer cluster, is it still necessary to source/configure the freesurfer module in a .bashrc script on Linux? Sincerely, Yilei ___ Fr

[Freesurfer] Freeview cannot be opened (MacOS)

2024-07-01 Thread Melih Keskin
External Email - Use Caution Hi, I am trying to open Freeview using my M1 Macbook (Monterey version 12.5). I am posting the error it gives me below. I followed the steps from the below thread but none of the solutions worked (mainly changing the privacy settings and getting a new

Re: [Freesurfer] LME longitudinal subcortical ROI analysis

2024-07-01 Thread Dan Levitas
External Email - Use Caution Thanks Martin, I just want to clarify that this then is the correct workflow: 1). Import the table generated from *asegstats2table* (asegstats2table.long.table), and select the column pertaining to the ROIs and eTIV. 2). Add to this table any covariat

Re: [Freesurfer] LME longitudinal subcortical ROI analysis

2024-07-01 Thread Reuter, Martin,Ph.D.
Hi Dan, No, mris_preproc and also surf2surf are functions that work on surfaces. You would just import the volume statistics into Matlab and fill the corresponding columns in your matrix directly, similar to using co-variates such as eTIV. Best, Martin On 1. Jul 2024, at 14:03, Dan Levitas w

Re: [Freesurfer] LME longitudinal subcortical ROI analysis

2024-07-01 Thread Dan Levitas
External Email - Use Caution Hi Martin, I wanted to ping this thread again, to confirm that my proposed mass-univariate workflow using the subcortical segmented ROIs is appropriate for the LME longitudinal analysis. Thanks again. Dan On Thu, Jun 27, 2024 at 5:44 AM Dan Levitas