Re: [Freesurfer] Scanner and Freesurfer-version differences

2024-07-02 Thread Bronwyn Overs
External Email - Use Caution Hi Douglas, Thank you so much for your replies. This is extremely helpful. Kind regards, Bronwyn Overs Research Assistant Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia

Re: [Freesurfer] freesurfer as module

2024-07-02 Thread Dong, Yilei
External Email - Use Caution Thank you very much! From: fsbuild Sent: Tuesday, July 2, 2024 11:23 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] freesurfer as module My understanding is that it is up to the sysadmins who run

Re: [Freesurfer] Freeview cannot be opened (MacOS)

2024-07-02 Thread fsbuild
External Email - Use Caution If you prefer to run the last stable release (7.4.1), then I suggest downloading and installing the Intel binary package installer, https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.4.1/freesurfer-macOS-darwin_x86_64-7.4.1.pkg; To bypass

Re: [Freesurfer] Calculating intensity of Individual voxel

2024-07-02 Thread Huang, Yujing
Replace [c r s] with voxel coordinates that you are interested in. From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of ERNEST KISSI Sent: Tuesday, July 2, 2024 2:52 PM To: Freesurfer support list Subject: Re: [Freesurfer] Calculating intensity of Individual voxel External Email

Re: [Freesurfer] Calculating intensity of Individual voxel

2024-07-02 Thread ERNEST KISSI
External Email - Use Caution When I tried this , I got 0.0. I have attached a screenshot of it. [image: image.png] On Fri, Jun 21, 2024 at 2:47 PM Huang, Yujing wrote: > ‘mri_info vol.mgz --voxel c r s’ will print the voxel value from col row > slice of all frames. > > >

Re: [Freesurfer] freesurfer as module

2024-07-02 Thread fsbuild
External Email - Use Caution My understanding is that it is up to the sysadmins who run a cluster to choose how to present and configure the apps they host whether it be thru modules, spack, or other tools. We don't track how cluster admins do that, but you could ask the

Re: [Freesurfer] Scanner and Freesurfer-version differences

2024-07-02 Thread Douglas N. Greve
On 7/1/2024 1:05 AM, Bronwyn Overs wrote: External Email - Use Caution Hi Freesurfer Mailing List, I work on a large bipolar disorder imaging study that has been running for over 10 years. We previously acquired 2 sMRI time-points (pre 2013, /n/~500, /n/~250 at each time-point) on