& Neuroscience, King's College London
Telephone: +44 (0)20 7848 5701
Email: derek.andr...@kcl.ac.uk
On 08/11/2016 17:35, "Andrews, Derek" <derek.andr...@kcl.ac.uk> wrote:
>This sender failed our fraud detection checks and may not be who they
>appear to be. Learn about
_cor2label with the --surf option to convert it to a label
>
>
>On 11/8/16 9:41 AM, Andrews, Derek wrote:
>> Hi Bruce and Freesurfer developers,
>>
>> Thank you. Any suggestions on converting a binary .w file to a label
>>would
>> be very helpful.
>>
&g
he holes you would
>like to fill in. Note that this will also fill in some concavities in the
>boundary of the label.
>
>cheers
>Bruce
>
>
>On Tue, 8 Nov 2016, Andrews, Derek wrote:
>
>> Hi Bruce,
>>
>> Apologies for contacting you directly but I’m not sure if my m
close the label N times before writing
> --dilate Ndilate the label N times before writing
> .
> .
> .
>
> if your version doesn't have these operations let us know and we can get
> you an updated one
>
> cheers
> Bruce
>
>
>
>
N times before writing
>--dilate Ndilate the label N times before writing
> .
>.
>.
>
>if your version doesn't have these operations let us know and we can get
>you an updated one
>
>cheers
>Bruce
>
>
>
>On Fri, 28 Oct 2016,
>Andrews, Der
riting
>--open N open the label N times before writing
>--close N close the label N times before writing
>--dilate Ndilate the label N times before writing
> .
>.
>.
>
>if your version doesn't have these operations let us know and we can get
>yo
open N open the label N times before writing
>>--close N close the label N times before writing
>>--dilate Ndilate the label N times before writing
>> .
>> .
>> .
>>
>> if your version doesn't have these operations let us know and we ca
4:54, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote:
>p.s. you could remove many/most of these holes using a morphological
>close operation
>On Fri, 28 Oct 2016, Andrews, Derek wrote:
>
>> Hello Freesurfer Developers and Community,
>>
>> I am loo
Dear Freesurfer developers,
I would like to perform an analysis that requires me to have all of my subjects
surface based and diffusion data in the same space.
I have performed recon-all -qcache so that all my surface based measures are in
fsaverage space.
I now would like to register the
e that works add more rows.
Best Martin
On Jul 11, 2016 12:58 PM, "Andrews, Derek"
<derek.andr...@kcl.ac.uk<mailto:derek.andr...@kcl.ac.uk>> wrote:
Dear FreeSurfer Developers and Community,
I have been trying to run some commands using the -qdec-long flag (I.e.
asegstats2t
Dear FreeSurfer Developers and Community,
I have been trying to run some commands using the -qdec-long flag (I.e.
asegstats2table & mris_preproc) but am encountering errors. In the past I have
used .rtf files to read in my data using the -fsgd flag but am unsure of how to
go about this with
lopmental Sciences
>Institute of Psychiatry, Psychology & Neuroscience, King's College London
>
>Telephone: +44 (0)20 7848 5701
>Email: derek.andr...@kcl.ac.uk
>
>
>
>
>
>On 03/12/2015 17:26, "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> wrote:
>
&
Dear FreeSurfer Support team and Community
I am wondering if someone can give me an explanation of the difference between
g-w.pct and g:w ratio (as calculated by; fscalc lh.gm.mgh div lh.wm.mgh -o
lh.ratio.mgh)
Will both these measures essentially measure the relationship between grey and
5 11:33, "Andrews, Derek" <derek.andr...@kcl.ac.uk> wrote:
>Dear Douglas,
>
>Thank you for response. To clarify, I need to find out where in the lGI
>scripts zcat is being called so that I can change the code to use
>so
r.mgh.harvard.edu> wrote:
>
>you can find out where it is with
> which zcat
>
>On 11/03/2015 07:42 AM, Andrews, Derek wrote:
>> Hello Freesurfer Support Team,
>>
>> I have encountered an issue running recon-all lgi that I believe is
>> due to a zcat issue on
Hello Freesurfer Support Team,
I have encountered an issue running recon-all -lgi that I believe is due to a
zcat issue on mac OSx where a .Z is added to the end of the file name the
resulting error looks like this...
>> reading filled volume...
zcat: can't stat:
, since the vertices added
>during the correction are at the end of the array)
>
>cheers
>Bruce
>
>On Fri, 25 Sep 2015, Andrews, Derek wrote:
>
>> Dear FreeSurfer Support Team
>>
>> First of all, I must thank you for your excellent software!
>>
>> I
Dear FreeSurfer Support Team
First of all, I must thank you for your excellent software!
I have been looking at distributions of various free surfer features
(histograms of the vertex wise measures). I have noticed some high values
among the pial and white matter surfaces, these values range
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