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Hi:
Is there a freesurfer facility where an MRI study can be processed
remotely?
Sincerely,
Gonzalo Rojas Costa
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lling the application may fix this problem.
Available platform plugins are: eglfs, linuxfb, minimal, minimalegl,
offscreen, vnc, wayland-egl, wayland, webgl, xcb."
How can I correct it?
Sincerely,
Gonzalo Rojas Costa
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Hi:
Is there a freesurfer-based system that allows processing online an
mprage image?
Sincerely,
Gonzalo Rojas Costa
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utput outputDir/" ?
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The information in this e-mail is intended only for the person to whom it is
addres
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Hi:
I processed an fMRI task using FSL. I got the standard image coregistered
result... How can I show the thresh_zstat1.nii file in fsaverage pial
surface?
Sincerely,
Gonzalo Rojas Costa
from 0-80 hounsfield units...
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
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Hi:
I need to take screenshots of all axial slices of a volumetric image that
I am viewing using freeview (flair with a segmentation). How can I do it
automatically?
Sincerely,
Gonzalo Rojas Costa
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Hi:
I need to take screenshots to all axial slices of a volumetric image that
I am viewing using freeview (flair with a segmentation).
Sincerely,
Gonzalo Rojas Costa
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self._metric_methods[self._label_length].create(*args)
tensorflow.python.framework.errors_impl.AlreadyExistsError: Another metric
with the same name already exists."
Which could be the problem ?
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
Clínica las Condes
Lo Fontecilla 44
/home/developer/Documents/OAS31367/sub-OAS31367_sess-d0142_run-01_CT_0_80.nii.gz
--o /home/developer/Documents/OAS31367 --cpu
SynthSeg 2.0
using CPU, hiding all CUDA_VISIBLE_DEVICES
using 1 thread
predicting 1/1
Killed
What does "Killed" mean? Any log file?
Sincerely,
Gonzalo R
/home/developer/Documents/OAS31367/sub-OAS31367_sess-d0142_run-01_CT_0_80.nii.gz
--o /home/developer/Documents/OAS31367 --cpu
SynthSeg 2.0
using CPU, hiding all CUDA_VISIBLE_DEVICES
using 1 thread
predicting 1/1
Killed
What does "Killed" mean? Any log file?
Sincerely,
Gonzalo R
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Ok... Thanks you very much...
Gonzalo Rojas Costa
On Wed, Mar 8, 2023 at 5:38 PM Iglesias Gonzalez, Juan E. <
jiglesiasgonza...@mgh.harvard.edu> wrote:
> I added a flag (--ct) to mri_synthsr in FreeSurfer so people don’t need to
> c
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Hi Benjamin:
I tested with the clipping, and it works ok with a CT image.
Sincerely
Gonzalo Rojas Costa
El mié, 8 de mar de 2023, 14:39, Benjamin Billot escribió:
> Yes, agreed.
>
> Gonzalo: Also, if SynthSeg still gives you a bad res
External Email - Use Caution
Hi:
I tried SynthSeg using CT images, but I got very bad results... CT
images must have some specific characteristics? I tried with axial
acquisition and volumetric one
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
Clínica las
0 and rerun."
Where can I find the FS_RESCALE_DICOM option ?
Sincerely,
Gonzalo Rojas Costa
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Hi:
How can I install two different versions of freesurfer on the same
computer?
Sincerely,
Gonzalo Rojas Costa
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r for model-based eddy-current distortion correction,
ERROR: must specify PE direction"
Why?
Sincerely,
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? VRAM?
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
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Hi:
SynthSeg is useful for T1-GD volumetric images? Another algorithm, software?
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
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Hi:
How can I convert a .reg.lta linear transform to an ITK transform
for 3DSlicer?
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
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Hi:
I coregistered a PET file to a freesurfer data using mri_coreg
command. I imported the freesurfer-generated data to 3D Slicer. How
can I import the PET.reg.lta file in 3D Slicer?
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
External Email - Use Caution
Hi:
Is it possible to use input diffusion files in MOSAIC IMA Siemens
file format directly? Or is it necessary to convert to nifti file
format first?
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of
gMyCGFELAc-ReX5c6q891gCUl35SRXIWZUO0yvLGMBLAKZQpvywUwHckAUlf5_8SQ9ch05XQW5ockkLH0E_yaqNOGE5DPhCDJRX5qjywx1yF5JcMkcPbiNNbEc34hoNaOpP1Y0xmpNNirDZiIGlgBoFYRkmonGJsbGHxJHNnN8Vok295ZKv2AcDxmDMdvWQZIyAINNHpr5ixKNj5750wSN4LPTZHn8/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Ftrac-all,
but It was not
clear to me how to solve the problem.
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
C
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Hi:
I tried to use mri_synthseg and mri_synthsr commands, but I got the
error message "Illegal instruction (core dumped)". Any solution? I
have the March 31st, 2022 version.
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
C
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Hi:
"Vertex Talairach" in tksurfer: how does it relate to MNI coordinates?
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-9777
%2Farticles%2F10.3389%2Ffnins.2018.00235%2Ffull
How to convert that MNI coordinates to vertex in the pial surface ?
Sincerely
Gonzalo Rojas Costa
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
http://secure
? Especially hippocampal segmentation.
Sincerely,
Gonzalo Rojas Costa
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Hi:
Which is the best library or software to create the hippocampus mesh from
aseg segmentation?
Sincerely
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Hi:
Where can I find the virtual disk image of freesurfer 7.1.1 ?
Sincerely,
Gonzalo Rojas Costa
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reprocess ?
Other question... what do you mean with " You might be comparing dewarped
vs not dewarped"
Sincerely,
Gonzalo Rojas Costa
>Message: 6
>Date: Thu, 10 Sep 2020 12:42:41 -0400
>From: "Douglas N. Greve"
>Subject: Re: [Freesurfer] big difference betwe
system in both cases...
I reviewed the coregistration to MNI305 and it is reasonably good in both
cases...
The case was reviewed by an expert neuroradiologist, and she does not
consider that there is a significant visual difference between both sizes.
Sincerely
Gonzalo Rojas Costa
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Hi:
No... I don't have any specific issue... I have a previous freesurfer
version installed that I want to continue using. So I want to install
version freesurfer 7.0 on a virtual machine...
Sincerely,
Gonzalo Rojas Costa
> Message:
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Hi:
How can install freesurfer 7.0.0 in a virtual machine ?
Sincerely,
Gonzalo Rojas Costa
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I solve it ?
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Gonzalo Rojas Costa
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Hi:
Where can I find the FreeSurfer 6.0 disk image for VirtualBox?
Sincerely,
Gonzalo Rojas Costa
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Medical Imaging (AMI) JS
Toolkit" (https://fnndsc.github.io/ami), but I have some problems...
Sincerely,
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Hi:
Do you know any library to show freesurfer data (mesh and axial,
coronal, sagittal slices) embedded a web page?
Sincerely,
Gonzalo Rojas Costa
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Hi:
How can I get cortical thickness surface image with values more than 5 mm?
Sincerely
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Hi:
How can I get the different values of cortical thickness in the
insula? Not the mean and SD...
Sincerely
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Hi:
How can I get in an automatic way curved reformat images (for
example, see paper
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009174/)
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
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Hi:
What is the meaning of the "CorticalWhiteMatterVol" measure?
Sincerely,
Gonzalo Rojas Costa
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Hi:
Could you please tell me if Is there is a paper on myelination and
segmentation?
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes
Hi:
To compute local Gyrification Index is necessary Matlab... Complete
installation or only runtime?
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Hi Douglas:
I am looking for that paper, but I couldn't found it... Which is it ?
Sincerely,
Gonzalo Rojas Costa
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-21
Hi Douglas:
I am looking for papers that used the volume of each lobe computed
using freesurfer, but I couldn't found it... Do you know any?...
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441
Hi Douglas:
Why you specified 5mm as the default value for the --wmparc-dmax
option in mri_aparc2aseg command?
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56
Hi Douglas:
By removing --rip-unknown I got the same results... Why ?...
Sincerely,
Gonzalo Rojas Costa
> Date: Tue, 12 Sep 2017 12:33:11 -0400
> From: Douglas N Greve
> Subject: Re: [Freesurfer] lobes volume (WM and GM)
> To: freesurfer@nmr.mgh.harvard.edu
> Message-ID:
Hi:
I need the complete WM volume for each lobe... not only the WM up to
5mm beneath the lobes (default value) or 20 mm...
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago
Hi:
There exist any difference between the volumetric values obtained
using 1.5T and 3.0T images ? Any paper about it ?
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile
freesurfer 5.3 and 6.0 in the same operating system, there will be any
difference in subcortical volumes and/or cortical thickness ?...
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago
Hi:
There are any difference between subcortical structures volume,
cortical thickness, supratentorial volume, gray matter volume, etc.
computed with freesurfer 5.3 and 6.0 ?...
Sincerely,
Gonzalo Rojas Costa
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Laboratory for Advanced Medical Image Processing
Hi:
I have two timepoints of the same patient: the first is in 1.5T and the
second in 3.0T... Is it possible to do the longitudinal study (subcortical
volumes) using the Workflow Summary described in
https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing ?...
Sincerely,
Gonzalo Rojas
Hi:
I have some longitudinal study of a patient with 1.5 T images...
now, we have 3T mprage images of the same patient... how can I do the
comparison of the subcortical volume of the patient ?...
Sincerely,
Gonzalo Rojas Costa
--
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Laboratory for Advanced Medical Image
Hi:
Must I use any recon-all option for 7T images ?...
Sincerely,
Gonzalo Rojas Costa
--
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Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
Hi:
Which freesurfer version must I install in Ubuntu 14.04 LTS 64 bits ?...
Sincerely...
Gonzalo Rojas Costa
--
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2
Hi:
For example: if I want to compare the volume of left hyppocampus in two
time points, could I compare the volume in aseg.stats file of both "long"
folders?...
Sincerely,
Gonzalo Rojas Costa
--------
Gonzalo Rojas Costa
Advanced Medical Image Processing
files in each "long" folder
?...
Sincerely,
Gonzalo Rojas Costa
--------
Gonzalo Rojas Costa
Advanced Medical Image Processing Laboratory
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
in both cases is: 1348899,976 and
1332590,755197... Why is the difference in volumen in the structures in
both studies ?... Why is always bigger at 42 years old than 39 years
old?... Any technical problem ?... We got a similar difference
by normalizing with ICV...
Sincerely,
Gonzalo Rojas Costa
Hi:
I don't know it is an mprage got in our center using a Siemens Avanto
equipment freesurfer specify that the images has two nframes and for
that reason freesurfer could not process it...
Sincerely
Gonzalo Rojas Costa
>Hi Gonzalo
>
>what is in the two frames?
>Bru
Hi:
I have an mprage image with nframes = 2... how can I convert it to use it
in freesurfer ?...
Sincerely,
Gonzalo Rojas Costa
Gonzalo Rojas Costa
Advanced Medical Image Processing Laboratory
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las
Hi:
How can I segment the pons and midbrain using freesurfer ?... or any other
segmentation software that do such task ?...
Sincerely,
Gonzalo Rojas Costa
Gonzalo Rojas Costa
Advanced Medical Image Processing Laboratory
Department of Radiology
Clínica las
Hi Bruce;
Thanks you very much... It rans ok...
Sincerely,
Gonzalo Rojas Costa
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel
Hi:
I have some freesurfer processed studies I used 5.1 version, and now I
found that it don't has the brodmann area labels and statistics generated
in some studies... How can I create it without doing again the complete
recon-all ?
Sincerely,
Go
Hi:
Which is the freeview newest version ?... the one that is included in
freesurfer 5.3.0 package ?...
Sincerely,
Gonzalo Rojas Costa
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla
the GE images appears smoothed in comparison with the Siemens
Avanto mprage images that we also use...
Any comments ?
Sincerely,
Gonzalo Rojas Costa
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Hi:
I has a "subjects" folder in one physical harddisk... How can I continue
processing more images in another "subjects" folder in a new physical
harddisk without erasing the first one ?...
Sincerely
Gonzalo Rojas Vosta
--
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Laboratory for Ad
Hi Douglas:
The file is the OAS1_0001_MR1 case of OASIS-BRAINS database that I
re-processed using freesurfer 5.2.0...
Sincerely,
Gonzalo Rojas Costa
On Fri, May 31, 2013 at 12:12 PM, Douglas N Greve
wrote:
> don't know what's going on. Can you upload the subject to our file
251 252 253 254 255 nctx = 688931
Used brute-force search on 139 voxels
Fixing Parahip LH WM
Found 0 clusters
Fixing Parahip RH WM
Found 0 clusters
Writing output aseg to mri/lobulitos_2.mgz
Sincerely,
Gonzalo Rojas Costa
On Thu, May 30, 2013 at 4:10 PM, Douglas N Greve
wrote:
> can
Hi Doug:
But, in the mri_aparc2aseg command, I test with the "--wmparc-dmax
200" option... I put that big value to test it, but I got the image
that I sent you...
Sincerely,
Gonzalo Rojas Costa
On Thu, May 30, 2013 at 12:06 PM, Douglas N Greve
wrote:
>
> It is probably th
Hi Doug:
It is labeled as wm-rh-fusiform and wm-lh-fusiform
Sincerely,
Gonzalo Rojas Costa
On Tue, May 28, 2013 at 1:47 PM, Douglas N Greve
wrote:
> what is is labled?
>
> On 05/28/2013 01:42 PM, Gonzalo Rojas Costa wrote:
>>
>> Hi Doug:
>>
>>I use
commans with different options, but I couldn't get the volume that I
need...
Sincerely,
--
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Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
www.c
Hi Nick:
Ok... Tomorrow Sunday I will download and begin to test it...
And which other new features has version 5.3.0 over 5.2.0 ?...
Sincerely,
Gonzalo Rojas Costa
On Fri, May 3, 2013 at 5:46 PM, Nick Schmansky
wrote:
> this link is here:
>
> ftp://surfer.nmr.mgh.harvar
Hi Bruce:
Ok... I am interested in the 5.3 beta version...
Sincerely,
Gonzalo Rojas Costa
On Fri, May 3, 2013 at 8:41 AM, Bruce Fischl wrote:
> Hi Gonzalo
>
> version 5.3 is midway through the QA process. We can give you a beta of it
> in the next couple of days if you wa
Hi Bruce:
And, where is version 5.3 ?... in the "nightly dev builds" ?...
Sincerely,
Gonzalo Rojas Costa
On Thu, May 2, 2013 at 9:29 PM, Bruce Fischl wrote:
> Hi Gonzalo
> Try it with 5.3, or upload and I can r. It for you
> Bruce
>
>
>
> On May 2, 2013,
Hi Bruce:
I tested 4.5 and 5.1 versions... with the first I processed
complete, and with 5.1 only autorecon1 section...
Sincerely,
Gonzalo Rojas Costa
On Thu, May 2, 2013 at 1:31 PM, Bruce Fischl wrote:
> what version are you running? The newer ones are *much* better at this
>
problems...
Sincerely,
--
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Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
www.clc.cl
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Hi:
How can install version 5.2 in a computer without uninstalling
version 5.1 ?...
Sincerely,
--
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Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9
lh
white
And, for WM I know that I must use the commands: mri_aparc2aseg and
mri_segstats, but I don't know the options of each command that I must
use... Could you please send me the complete commands for WM?...
Sincerely,
--
Gonzalo Rojas Costa
Laboratory for Advanced Medical
Hi:
What is the default thickness of the corpus callosum?... 5 mm ?...
2 mm for each side from midline ?...
Sincerely,
--
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel
results...
Sincerely,
--
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Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
www.clc.cl
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Hi Anastasia:
And, which options do you think I must use with bedpostx ?... The default ?...
Sincerely,
Gonzalo Rojas Costa
On Mon, Jul 30, 2012 at 5:36 PM, Anastasia Yendiki wrote:
>
> Hi Gonzalo - This has come up a few times recently. Please see here:
> http://www.mail-ar
NONE: unexpected operator
[: 327: xbedpostx_post: unexpected operator
[: 486: x: unexpected operator
[: 486: -le: argument expected
That problem occurr because my PC is not a parallelized environment?...
Sincerely,
--
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Laboratory for Advanced Medical Image Processin
Hi:
How much memory needs tracula to process a DTI study ?... Because my
PC (Ubuntu Linux, 4GB RAM) exit because it can't allocate memory in
trac-preproc... There exist any tip & trick in such a case?...
Sincerely,
--
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Laboratory for Advanced Medical Image P
Hi:
How much time (aprox) take each step of tracula processing ?...
Sincerely,
--
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Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
www.clc.cl
Hi:
How can I do a decimation to 1 polygons aprox to the pial surface ?...
Sincerely,
--
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Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
Hi:
Any reference about how freesurfer divides the corpus callosum in
CC_Posterior, CC_Mid_Posterior, CC_Central, CC_Mid_Anterior,
CC_Anterior ?...
Sincerely,
Gonzalo Rojas Costa
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Hi:
For example, if I execute the mri_cc command with "-t 2", mri_cc
shows me "setting callosum thickness to 5 mm"... Why ?... What exactly
specify the -t option ?...
Sincerely,
Gonzalo Rojas Costa
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Hi:
In aseg.stats the WM hypointensities is included in left-cerebral
(right-cerebral) white matter volume ?...
Sincerely,
Gonzalo Rojas Costa
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Hi:
In rh.aparc.a2009s.stats file, appears the average cortical thickness
(ThickAvg) value for frontal middle gyrus (G_front_middle): how can I
get the values of the cortical thickness in that gyrus (for example),
not the average value ?...
Sincerely,
Gonzalo Rojas Costa
tration took 15 minutes and 1 seconds.
Abort"...
How can I correct it ?...
Sincerely
Gonzalo Rojas Costa
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The information in thi
Hi:
There exist any paper related to the subcortical volume in children
(below 15 years old)?... any image database ?...
Sincerely,
Gonzalo Rojas Costa
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Hi Douglas:
The solution that you sent me runs only in freesurfer 5... Do you
have ay solution for freesurfer 4.5.0 to compute GM+WM volume for each
lobule ?...
Sincerely,
Gonzalo Rojas Costa
On Mon, Sep 26, 2011 at 11:01 AM, Douglas N Greve
wrote:
> You can run mri_annotation2la
Hi:
How can I get the volume of the different lobes of the brain
(occipital, parietal, temporal, etc) ?... White matter and gray
matter?... Labels ?...
Sincerely,
Gonzalo Rojas Costa
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Hi Carolina:
Is it possible, but in my case when the hard disk is full at the
moment of the processing, I got a fatal error from recon-all command...
Sincerely,
Gonzalo Rojas Costa
El 19-09-2011 9:53, Carolina Valencia escribió:
> Thanks for the answers.
> I think the problem w
Hi Carolina:
And did you tested the tksurfer command ?...
for example: tksurfer CORBIC_vol01 rh pial
Sincerely,
Gonzalo Rojas Costa
Department of Radiology
Clinica Las Condes
Santiago
Chile
> Message: 4
> Date: Sun, 18 Sep 2011 10:25:26 -0400 (EDT)
> From: Bruce Fischl
>
Hi:
Which is the optimal parameters for a morphometric sequence in a 1.5
T MR OPTIMA 450w GE MRI equipment ?...
Sincerely,
Gonzalo Rojas Costa
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fied in
expert.opts ?...
Sincerely,
Gonzalo Rojas Costa
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The information in this e-mail is intended only for the person to whom it
Hi:
In the web page "FSTutorial/TroubleshootingData - Free Surfer Wiki"
appears "Try using an xopts script first to change the intensity
thresholds being used"... What is a xopts script ?... How can I use a
xopts script to change the intensity thresholds ?...
Sincer
Hi Bruce:
I ran with -make all, and I get good results... It seems that
freesurfer uses the wm.mgz and aseg.mgz editions that I did...
Sincerely,
Gonzalo Rojas Costa
El 27-07-2011 11:48, Bruce Fischl escribió:
> Hi Gonzalo,
>
> Nick can correct me if I'm wrong, but the i
g.mgz) ?...
Sincerely,
Gonzalo Rojas Costa
El 25-07-2011 18:51, Bruce Fischl escribió:
> -make all should work.
>
> cheers
> Bruce
> On Mon, 25 Jul 2011, Gonzalo Rojas Costa wrote:
>
>> Hi
>>
>> I editted the wm.mgz and aseg.mgz files... Which recon-all command
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