Re: [Freesurfer] AAL and freesurfer atlas concordance

External Email - Use Caution Dear All I have seen posts discussing about bringing AAL to freesurfer etc. I am wondering whether anyone has created a table of concordance between the regions in AAL to the freesurfer or the vice versa. If so can you please share with me. For my

[Freesurfer] AAL and freesurfer atlas concordance

External Email - Use Caution Dear All I have seen posts discussing about bringing AAL to freesurfer etc. I am wondering whether anyone has created a table of concordance between the regions in AAL to the freesurfer or the vice versa. If so can you please share with me. For my

Re: [Freesurfer] Fwd: mpr2mni305 failed, see transforms/talairach_avi.log

On Mon, 2014-06-23 at 08:46 +0530, Venkateswaran Rajagopalan wrote: Hi Bruce, Thanks very much. I will wait for Avi Synder's response. Thanks a lot Venkat On Sat, Jun 21, 2014 at 8:23 PM, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote: Hi Venkat I'll cc

Re: [Freesurfer] Fwd: mpr2mni305 failed, see transforms/talairach_avi.log

, Venkateswaran Rajagopalan wrote: Dear All, I am sorry to post this again. Any help will be greatly appreciated. I am struck as I am unable to run the recon-all step. Thanks Venkat -- Forwarded message -- From: Venkateswaran Rajagopalan venkateswa...@hyderabad.bits

[Freesurfer] Can some send me rh.average.curvature.filled.buckner40.tif file

Dear All, when I run recon-all I encounter errro saying that rh.average.curvature.filled.buckner40.tif file is missing. I found this file missing in my average folder so if someone can send it as an attachment or guide me to where I can find it it will be great help. Many thanks in advance

[Freesurfer] mpr2mni305 failed, see transforms/talairach_avi.log

Hi All, I am getting the the following error when I run recon-all -subjid E368 -autorecon1 ERROR: mpr2mni305 failed, see transforms/talairach_avi.log Here is what talairach_avi.log says /home/administrator/Desktop/freesurfer/subjects_dir/E368/mri /usr/local/freesurfer/bin/talairach_avi --i

[Freesurfer] Fwd: mpr2mni305 failed, see transforms/talairach_avi.log

Dear All, I am sorry to post this again. Any help will be greatly appreciated. I am struck as I am unable to run the recon-all step. Thanks Venkat -- Forwarded message -- From: Venkateswaran Rajagopalan venkateswa...@hyderabad.bits-pilani.ac.in Date: Fri, Jun 20, 2014 at 5:14 PM

Re: [Freesurfer] Freesurfer installation problem

-stable-pub-v5.3.0.tar.gz Also, v5.0.0 is pretty old, I'd recommend v5.3.0. Nick On Tue, 2014-06-10 at 13:23 +0530, Venkateswaran Rajagopalan wrote: Dear All, I looked into the archives extensively but could not find a solution to my problem. I am having Ubuntu Linux administrator

[Freesurfer] Freesurfer installation problem

Dear All, I looked into the archives extensively but could not find a solution to my problem. I am having Ubuntu Linux administrator-HP-Pro-3330-MT 3.13.0-24-generic #46-Ubuntu SMP Thu Apr 10 19:08:14 UTC 2014 i686 i686 i686 GNU/Linux. I tried installing

Re: [Freesurfer] Freesurfer installation problem

/freesurfer/bin/mri_convert cheers Bruce On Tue, 10 Jun 2014, Venkateswaran Rajagopalan wrote: Dear All, I looked into the archives extensively but could not find a solution to my problem. I am having Ubuntu Linux administrator-HP-Pro-3330-MT 3.13.0-24-generic #46-Ubuntu SMP Thu