Hi Michael,
while fslmaths has an option to do 2D smoothing, this is still only
smoothing in a slice of the volume and has the same problems as 3D
smoothing (ie, smoothing across tissue types and sulci). The 2D that
FS implements with mris_volsmooth is along the cortical surface, which
is
Thanks for you input Michael. For some reason, I only saw your answer
after Dougla's response. Assuming that I do not want to do volume-based
analysis and just want nice pics of my blobs over a 3D brain, would
Michael's suggestion work? If so, what is the next step after using
fslroi, as the
Estephan Moana wrote:
Thanks for you input Michael. For some reason, I only saw your answer
after Dougla's response. Assuming that I do not want to do
volume-based analysis and just want nice pics of my blobs over a 3D
brain, would Michael's suggestion work? If so, what is the next step
Estephan,
I can ask our IT people about an RSS feed.
Another option is to turn-on digest mode under the mailing list options.
Freesurfer emails would arrive in once-a-day bundles.
https://mail.nmr.mgh.harvard.edu/mailman/options/freesurfer
Nick
On Thu, 2009-09-24 at 12:35 -0400, Estephan
Estaphan,
It turns out the freesurfer mailing list does support RSS feeds:
http://www.mail-archive.com/freesur...@surfer.nmr.mgh.harvard.edu/maillist.xml
Nick
On Thu, 2009-09-24 at 13:25 -0400, Nick Schmansky wrote:
Estephan,
I can ask our IT people about an RSS feed.
Another option is
Thanks Nick, this helps a lot!
Estephan
Nick Schmansky wrote:
Estaphan,
It turns out the freesurfer mailing list does support RSS feeds:
http://www.mail-archive.com/freesur...@surfer.nmr.mgh.harvard.edu/maillist.xml
Nick
On Thu, 2009-09-24 at 13:25 -0400, Nick Schmansky wrote:
The example_func does not actually get smoothed, so smoothing itself
will not affect the registration. 3D smoothing will smooth values from
WM and CSF into gray and from across sulci into functionally distinct
regions. For this reason we recommend not using 3D smoothing (or doing
2D smoothing
Hello all, I took the FS course last June at the OHBM in San Francisco,
and am now playing with it to get to know it better. One of the slides
on the talk about FSL-FS integration mentioned that the input data (from
FEAT) for the reg-feat2anat command should have not been smoothed prior
to
